Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SARLGA251_RS10475 Genome accession   NC_017349
Coordinates   2113112..2113507 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus LGA251     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2108112..2118507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SARLGA251_RS10445 (SARLGA251_18930) thiE 2108711..2109352 (-) 642 WP_000483148.1 thiamine phosphate synthase -
  SARLGA251_RS10450 (SARLGA251_18940) thiM 2109354..2110145 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  SARLGA251_RS10455 (SARLGA251_18950) thiD 2110129..2110959 (-) 831 WP_000594944.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SARLGA251_RS10460 (SARLGA251_18960) tenA 2110952..2111641 (-) 690 WP_000396078.1 thiaminase II -
  SARLGA251_RS10470 (SARLGA251_18970) sceD 2112028..2112723 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  SARLGA251_RS10475 (SARLGA251_18980) ssb 2113112..2113507 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SARLGA251_RS10480 (SARLGA251_18990) - 2113701..2114141 (+) 441 WP_000846746.1 YwpF-like family protein -
  SARLGA251_RS10485 (SARLGA251_19000) fabZ 2114198..2114638 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SARLGA251_RS10490 (SARLGA251_19010) murA 2114672..2115937 (-) 1266 WP_000358001.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SARLGA251_RS10495 (SARLGA251_19020) - 2116048..2116281 (-) 234 WP_000384523.1 DUF1146 family protein -
  SARLGA251_RS10510 (SARLGA251_19030) - 2117042..2117446 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=46617 SARLGA251_RS10475 WP_000932694.1 2113112..2113507(-) (ssb) [Staphylococcus aureus subsp. aureus LGA251]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=46617 SARLGA251_RS10475 WP_000932694.1 2113112..2113507(-) (ssb) [Staphylococcus aureus subsp. aureus LGA251]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment