Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HZ310_RS18745 Genome accession   NZ_CP058951
Coordinates   3652702..3654081 (-) Length   459 a.a.
NCBI ID   WP_058015795.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3647702..3659081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS18725 (HZ310_18725) ispF 3649183..3649659 (-) 477 WP_180309713.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HZ310_RS18730 (HZ310_18730) ispD 3649663..3650352 (-) 690 WP_061406507.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HZ310_RS18735 (HZ310_18735) - 3650366..3651466 (-) 1101 WP_058015822.1 PIN/TRAM domain-containing protein -
  HZ310_RS18740 (HZ310_18740) disA 3651620..3652699 (-) 1080 WP_012008686.1 DNA integrity scanning diadenylate cyclase DisA -
  HZ310_RS18745 (HZ310_18745) radA 3652702..3654081 (-) 1380 WP_058015795.1 DNA repair protein RadA Machinery gene
  HZ310_RS18750 (HZ310_18750) clpC 3654175..3656610 (-) 2436 WP_003216969.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  HZ310_RS18755 (HZ310_18755) - 3656607..3657698 (-) 1092 WP_003217181.1 protein arginine kinase -
  HZ310_RS18760 (HZ310_18760) - 3657703..3658260 (-) 558 WP_034665655.1 UvrB/UvrC motif-containing protein -
  HZ310_RS18765 (HZ310_18765) - 3658275..3658739 (-) 465 WP_003217184.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50052.60 Da        Isoelectric Point: 7.9305

>NTDB_id=466117 HZ310_RS18745 WP_058015795.1 3652702..3654081(-) (radA) [Bacillus pumilus strain UAMX]
MAKTKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPVNRRSAFNHSVQTIQKPSPISAIETSDEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDKNQNVLYISGEESIKQTKLRADRLGIKSTSLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=466117 HZ310_RS18745 WP_058015795.1 3652702..3654081(-) (radA) [Bacillus pumilus strain UAMX]
ATGGCTAAGACAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAATCAGCCAAATGGATGGGGAAATGTCCAGGCTG
CGGCACGTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGTAAACCGTCGAAGCGCTTTTAATCATTCTGTCC
AAACCATTCAAAAACCTTCACCTATTTCTGCAATTGAAACATCAGATGAACCCCGAATCAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGCTCTCTTGTTCTCATTGGCGGAGATCCTGGAATTGGGAAGTCCACATT
ATTATTACAAGTATCAGCACAGCTCTCAGACAAAAATCAGAATGTATTATACATATCCGGTGAGGAGTCCATTAAACAAA
CGAAGTTAAGAGCGGACCGCCTCGGCATAAAAAGCACCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTCGTGGTGGATTCGATTCAAACTGTTTATCAAAGCGATATTACGTCAGC
CCCTGGGTCTGTATCTCAAGTGAGAGAATGTACAGCGCAGCTGATGAAGATTGCCAAGACAAATGGGATTCCAATTTTTA
TCGTTGGTCACGTGACCAAAGAAGGCTCGATCGCAGGTCCACGTCTTTTAGAGCATATGGTGGACACGGTTCTTTATTTT
GAAGGTGAGCGTCATCATACGTTTCGTATCTTACGTGCAGTGAAAAACCGATTTGGTTCAACGAATGAACTAGGGATTTT
TGAAATGAGAGAGGAAGGGCTCACGGAAGTATTAAACCCATCCGAAATTTTCTTAGAAGAACGTTCGGCAGGTGTATCTG
GTTCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCTGTTCTTGTCGAGATACAAGCGCTAATTTCACCAACAAGCTTC
GGAAATCCGCGTAGAATGGCCACTGGTCTTGATCATAATCGAGTGTCACTGCTCATGGCGGTTTTAGAAAAACGTGTTGG
ACTGCTGCTGCAAAACCAGGATGCGTATTTAAAGGTCGCAGGCGGTGTGAAGCTTGACGAACCAGCAATTGACTTGGCCA
TTGCGGTCAGTATTGCATCAAGCTTTAAAGACGCAGCGCCGCATCAAGCGGATTGCTTTATAGGAGAGGTCGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTGCAGGAAGCTGCGAAACTAGGATTTAAGCGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAGCCGAGAGGGATTGAGTTAGTCGGTGTAGAAAATGTAGCGGAGGCACTTCGAA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

86.9

99.782

0.867
  radA Streptococcus mitis NCTC 12261

61.589

98.693

0.608
  radA Streptococcus pneumoniae Rx1

61.589

98.693

0.608
  radA Streptococcus pneumoniae D39

61.589

98.693

0.608
  radA Streptococcus pneumoniae R6

61.589

98.693

0.608
  radA Streptococcus pneumoniae TIGR4

61.589

98.693

0.608
  radA Streptococcus mitis SK321

61.589

98.693

0.608