Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HZ310_RS07880 Genome accession   NZ_CP058951
Coordinates   1499162..1499965 (+) Length   267 a.a.
NCBI ID   WP_003215740.1    Uniprot ID   A0AB34QSQ5
Organism   Bacillus pumilus strain UAMX     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1494162..1504965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS07860 (HZ310_07860) - 1494167..1495021 (+) 855 WP_106067130.1 TlyA family RNA methyltransferase -
  HZ310_RS07865 (HZ310_07865) ahrC 1495181..1495630 (+) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  HZ310_RS07870 (HZ310_07870) recN 1495664..1497400 (+) 1737 WP_061408509.1 DNA repair protein RecN Machinery gene
  HZ310_RS07875 (HZ310_07875) spoIVB 1497599..1498876 (+) 1278 WP_058014714.1 SpoIVB peptidase -
  HZ310_RS07880 (HZ310_07880) spo0A 1499162..1499965 (+) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  HZ310_RS07885 (HZ310_07885) - 1500422..1501522 (+) 1101 WP_180310536.1 Rap family tetratricopeptide repeat protein -
  HZ310_RS07890 (HZ310_07890) - 1501748..1502485 (+) 738 WP_061408506.1 glycerophosphodiester phosphodiesterase -
  HZ310_RS07895 (HZ310_07895) - 1502520..1502756 (-) 237 WP_144462757.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29946.45 Da        Isoelectric Point: 6.3914

>NTDB_id=466090 HZ310_RS07880 WP_003215740.1 1499162..1499965(+) (spo0A) [Bacillus pumilus strain UAMX]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRRNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=466090 HZ310_RS07880 WP_003215740.1 1499162..1499965(+) (spo0A) [Bacillus pumilus strain UAMX]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGATGGCCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGGGCATCCTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGAAACAAACCTGAACCGAAACGCAGAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGTGTACCTGCTCATATTAAAGGGTACTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATCGCGAAGAAATTTAACACGACCGCGAGCAGGGTCGAAC
GAGCAATTCGTCATGCGATTGAAGTGGCTTGGAGTAGAGGAAACATCGACTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCTGAATTTATCGCAATGGTGGCTGACCGTCTCCGCTTGGAGCATCGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884