Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HZ310_RS07870 Genome accession   NZ_CP058951
Coordinates   1495664..1497400 (+) Length   578 a.a.
NCBI ID   WP_061408509.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1490664..1502400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS07845 (HZ310_07845) - 1490978..1491238 (+) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -
  HZ310_RS07850 (HZ310_07850) - 1491222..1492118 (+) 897 WP_199800955.1 polyprenyl synthetase family protein -
  HZ310_RS07855 (HZ310_07855) dxs 1492269..1494170 (+) 1902 WP_061408514.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HZ310_RS07860 (HZ310_07860) - 1494167..1495021 (+) 855 WP_106067130.1 TlyA family RNA methyltransferase -
  HZ310_RS07865 (HZ310_07865) ahrC 1495181..1495630 (+) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  HZ310_RS07870 (HZ310_07870) recN 1495664..1497400 (+) 1737 WP_061408509.1 DNA repair protein RecN Machinery gene
  HZ310_RS07875 (HZ310_07875) spoIVB 1497599..1498876 (+) 1278 WP_058014714.1 SpoIVB peptidase -
  HZ310_RS07880 (HZ310_07880) spo0A 1499162..1499965 (+) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  HZ310_RS07885 (HZ310_07885) - 1500422..1501522 (+) 1101 WP_180310536.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64829.62 Da        Isoelectric Point: 4.7788

>NTDB_id=466089 HZ310_RS07870 WP_061408509.1 1495664..1497400(+) (recN) [Bacillus pumilus strain UAMX]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDATDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTNVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=466089 HZ310_RS07870 WP_061408509.1 1495664..1497400(+) (recN) [Bacillus pumilus strain UAMX]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGACGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCTGACCACCCTGTATTTGCTTTA
TGCGAAGAGCAGGGAATTGACGCAACTGATGAAATGATGATCCTTCGCCGTGATATTAACAATAACGGGAAAAGCATTTG
CCGCATCAATGGCAAGCTCGTCACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTG
TCACAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAAGAAAT
GGTGCACCGATTAGATTTATTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAGATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCGAGCGAGCTCGAGCAGGTTTCTGAGATTAACGACGATCTAAAAAA
GCTTTCCGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTTCAAATGCGAAGCATGCTGGATCAATTAG
AGTTTGACCCAGCACGCCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAGCGAAAGTACGGGACGACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGGGACAGTCATCTTCAGAC
ACTTAAAAACAAACTGGATGCAATGAGCCGTGACGCCCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACATTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGGAAAAACGGAATTGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCTTCTGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCAGCCAAACAAGAGGTCACTTCCATTATTTTCGATGAGGTGGATACA
GGCGTAAGCGGCAGAGTTGCACAGGCAATTGCCGAAAAAATTTATAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCATCTCCCGCAAGTAGCAGCAATGGCTGACACGCATCTCTTCATTTCGAAACGCTCTAAAGCTGGTAGAACACTGACAA
ACGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTCGAAGTCACTGAGCTGACA
AAACAGCATGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.087

100

0.751