Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SARLGA251_RS06255 Genome accession   NC_017349
Coordinates   1264583..1265455 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus LGA251     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1259583..1270455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SARLGA251_RS06230 (SARLGA251_11550) - 1259729..1260496 (+) 768 WP_000176398.1 ribonuclease HII -
  SARLGA251_RS06235 (SARLGA251_11560) sucC 1260605..1261771 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  SARLGA251_RS06240 (SARLGA251_11570) sucD 1261793..1262701 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  SARLGA251_RS14780 - 1262927..1262983 (+) 57 Protein_1200 YSIRK-type signal peptide-containing protein -
  SARLGA251_RS06245 (SARLGA251_11580) - 1262987..1263139 (+) 153 Protein_1201 cell wall hydrolase -
  SARLGA251_RS06250 (SARLGA251_11590) fmhC 1263167..1264411 (+) 1245 WP_000672856.1 FemA/FemB family glycyltransferase FmhC -
  SARLGA251_RS06255 (SARLGA251_11600) dprA 1264583..1265455 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  SARLGA251_RS06260 (SARLGA251_11610) topA 1265629..1267704 (+) 2076 WP_078064619.1 type I DNA topoisomerase -
  SARLGA251_RS06265 (SARLGA251_11620) trmFO 1267860..1269167 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=46593 SARLGA251_RS06255 WP_000620182.1 1264583..1265455(+) (dprA) [Staphylococcus aureus subsp. aureus LGA251]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=46593 SARLGA251_RS06255 WP_000620182.1 1264583..1265455(+) (dprA) [Staphylococcus aureus subsp. aureus LGA251]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986

Multiple sequence alignment