Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HU825_RS02265 Genome accession   NZ_CP058908
Coordinates   455651..457243 (+) Length   530 a.a.
NCBI ID   WP_284692200.1    Uniprot ID   -
Organism   Pseudomonas phenolilytica strain RBPA9     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 450651..462243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU825_RS02245 (HU825_02240) pgeF 452502..453239 (-) 738 WP_054094572.1 peptidoglycan editing factor PgeF -
  HU825_RS02250 (HU825_02245) rluD 453236..454210 (-) 975 WP_234302815.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HU825_RS02255 (HU825_02250) - 454358..455347 (+) 990 WP_043297625.1 outer membrane protein assembly factor BamD -
  HU825_RS02260 (HU825_02255) - 455434..455661 (+) 228 WP_043297626.1 PP0621 family protein -
  HU825_RS02265 (HU825_02260) pilS 455651..457243 (+) 1593 WP_284692200.1 ATP-binding protein Regulator
  HU825_RS02270 (HU825_02265) pilR 457365..458705 (+) 1341 WP_043297627.1 sigma-54 dependent transcriptional regulator Regulator
  HU825_RS02275 (HU825_02270) - 458765..459823 (-) 1059 WP_043297628.1 DUF2333 family protein -
  HU825_RS02280 (HU825_02275) - 460042..461637 (+) 1596 WP_043297629.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58641.70 Da        Isoelectric Point: 8.0967

>NTDB_id=465917 HU825_RS02265 WP_284692200.1 455651..457243(+) (pilS) [Pseudomonas phenolilytica strain RBPA9]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHDSLLQMSNPAMFSNGAWLYLILNIVVSVLVQNPKRDMPVL
GLALMDVILLSGLFYFAGGTPSGIGNLLIVAVAIANILLRGRVGFFVAAVAAIGLIYLTFYLSLSRPEAARQFVQAAALG
TLCFAAALLVQGLTRRLQASEHLARQRAEDVANLEALNALILQRMRTGILVLDPQRQVLLANQGAQQLLEQPETGGLPLA
EYCPDLLNRLQQWQSNPTLRPEPLKIGQSGPIVQPSFASLQHGEKRNTLVFLEDSSHIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLHESESLDAADRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSELRNTLAPQ
QSVHLEVIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGLRHACAQVWLRLYRDPASDLPVVEVLDNGDGVAAEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFHIVFAHASKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=465917 HU825_RS02265 WP_284692200.1 455651..457243(+) (pilS) [Pseudomonas phenolilytica strain RBPA9]
GTGGGCACTGAGAACCTGGCCTTCCTGGGCGACCAGGGCCGGCGCATCCTGCGGCTGTATCATCTTTATCGCCTGACCAT
TGGTCTGGCGCTGGTGCTGCTGATCAGCAGCGATCTGCACGACAGCCTGCTGCAGATGAGCAACCCGGCGATGTTCAGCA
ACGGCGCCTGGCTCTACCTGATCCTTAACATCGTCGTGTCCGTGCTGGTGCAGAATCCGAAACGGGATATGCCGGTGCTG
GGCCTGGCGCTGATGGATGTGATCCTGCTATCGGGCCTGTTCTATTTCGCCGGCGGCACCCCCAGCGGCATCGGCAATCT
GCTGATCGTCGCCGTCGCCATCGCCAACATTCTGCTGCGCGGTCGGGTGGGCTTCTTCGTCGCGGCGGTCGCGGCCATCG
GCCTGATCTACCTGACCTTCTATCTCAGCCTGAGCAGACCGGAAGCCGCGCGCCAGTTCGTCCAGGCCGCAGCGCTGGGC
ACCCTGTGCTTCGCCGCCGCCCTGCTGGTTCAGGGGCTAACCCGCCGCCTGCAGGCCAGCGAACACCTGGCACGGCAGCG
TGCCGAGGATGTCGCCAACCTGGAAGCACTGAACGCGCTGATTCTGCAACGCATGCGCACCGGCATCCTGGTACTCGACC
CGCAACGACAGGTGCTGCTGGCCAACCAGGGCGCGCAACAGCTGCTCGAGCAGCCGGAGACCGGCGGGCTGCCGCTCGCC
GAATACTGCCCGGACCTGCTGAATCGCCTGCAGCAATGGCAGAGCAACCCGACCCTGCGCCCGGAGCCGCTGAAGATCGG
CCAGAGCGGCCCGATCGTGCAGCCGAGTTTCGCCTCGCTGCAGCATGGCGAGAAACGCAACACGCTGGTGTTTCTCGAGG
ACAGCTCGCACATCGCGCAGAAGGCCCAGCAGCTCAAGCTCGCCTCGCTCGGCCGCCTGACTGCCAGCATCGCCCACGAG
ATCCGCAACCCGCTTGGTGCCATCAGCCACGCGGCCCAGCTGCTGCACGAGTCCGAATCCCTGGATGCGGCGGACCGCCG
TCTGGCGCAGATCATCCAGGATCATTCGCGGCGCATGAATCTGGTCATCGAGAACGTCCTGCAGCTCTCGCGCCGACGCC
AGGCCGAACCGCAGCTACTGGATCTCAAGTATTGGCTGCACCGCTTCGTCAGCGAGCTGCGCAACACTCTGGCACCGCAG
CAGAGCGTTCACCTGGAAGTCATCGGCAGCTCGCTGCAGACGCGCATGGACCCCAATCAGCTCACCCAGGTGCTGACCAA
TCTCGTGCAGAACGGCCTGCGCTACAGCGGCTTGCGCCATGCGTGCGCCCAGGTATGGTTGCGCCTGTATCGCGACCCGG
CCAGCGACCTGCCGGTGGTGGAGGTCCTCGACAATGGCGACGGAGTGGCCGCCGAGCAGCTGCAGAACATTTTCGAGCCC
TTCTTTACTACCGAGAGCAAAGGTACCGGACTGGGCCTGTATATTTCTCGCGAGCTGTGCGAAAGCAACCAGGCGCGCCT
GGATTACCGCGAGCGCCCGGAGGGTGGCAGCTGCTTTCATATCGTCTTTGCGCATGCGAGCAAGACCAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.962

100

0.64