Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ECTR2_RS07400 Genome accession   NC_017343
Coordinates   1532826..1533272 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ECT-R     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527826..1538272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTR2_RS07370 (ECTR2_1387) gcvPA 1528752..1530098 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ECTR2_RS07375 (ECTR2_1388) gcvT 1530118..1531209 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  ECTR2_RS07380 (ECTR2_1389) - 1531368..1531892 (-) 525 WP_001015120.1 shikimate kinase -
  ECTR2_RS07385 - 1531882..1532028 (-) 147 WP_001792109.1 hypothetical protein -
  ECTR2_RS07390 (ECTR2_1390) comGF 1532125..1532622 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  ECTR2_RS07395 (ECTR2_1391) comGE 1532540..1532839 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  ECTR2_RS07400 (ECTR2_1392) comGD 1532826..1533272 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  ECTR2_RS07405 (ECTR2_1393) comGC 1533250..1533561 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ECTR2_RS07410 (ECTR2_1394) comGB 1533575..1534645 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  ECTR2_RS07415 (ECTR2_1395) comGA 1534617..1535591 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ECTR2_RS07420 (ECTR2_1396) - 1535643..1536266 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ECTR2_RS07425 (ECTR2_1397) - 1536263..1536592 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ECTR2_RS07430 (ECTR2_1398) - 1536592..1537578 (-) 987 WP_000161311.1 ROK family glucokinase -
  ECTR2_RS07435 - 1537575..1537778 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=46512 ECTR2_RS07400 WP_001788899.1 1532826..1533272(-) (comGD) [Staphylococcus aureus subsp. aureus ECT-R]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=46512 ECTR2_RS07400 WP_001788899.1 1532826..1533272(-) (comGD) [Staphylococcus aureus subsp. aureus ECT-R]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment