Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZL39_RS00040 Genome accession   NZ_CP058733
Coordinates   10175..10756 (+) Length   193 a.a.
NCBI ID   WP_003646183.1    Uniprot ID   A0AAD0X6R2
Organism   Lactiplantibacillus plantarum strain A8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5175..15756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZL39_RS00030 (HZL39_00030) gyrA 6656..9217 (+) 2562 WP_003641633.1 DNA gyrase subunit A -
  HZL39_RS00035 (HZL39_00035) rpsF 9839..10138 (+) 300 WP_003637271.1 30S ribosomal protein S6 -
  HZL39_RS00040 (HZL39_00040) ssb 10175..10756 (+) 582 WP_003646183.1 single-stranded DNA-binding protein Machinery gene
  HZL39_RS00045 (HZL39_00045) rpsR 10795..11031 (+) 237 WP_003641635.1 30S ribosomal protein S18 -
  HZL39_RS00050 (HZL39_00050) - 11212..13224 (+) 2013 WP_003643610.1 DHH family phosphoesterase -
  HZL39_RS00055 (HZL39_00055) rplI 13237..13689 (+) 453 WP_003641637.1 50S ribosomal protein L9 -
  HZL39_RS00060 (HZL39_00060) dnaB 13705..15129 (+) 1425 WP_003641638.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20936.35 Da        Isoelectric Point: 4.7453

>NTDB_id=465093 HZL39_RS00040 WP_003646183.1 10175..10756(+) (ssb) [Lactiplantibacillus plantarum strain A8]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQSANGGSGNNNYNNNNNGYSNQGQNAAPQQSSANNNNPFGNGNTGNAS
SAAPSSSANNNNQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=465093 HZL39_RS00040 WP_003646183.1 10175..10756(+) (ssb) [Lactiplantibacillus plantarum strain A8]
ATGATTAACCGTACAATTCTTGTTGGCCGACTGACAAGAGATCCAGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACGTTCACTATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTCATTAGTTGCGTCATTT
GGCGTAAAGCTGCTGAAAATTTTGCGAACTTTACTCATAAAGGTTCACTTGTTGGTATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGTGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCATTATTAGAATCACGGGC
AGAGTCTGAACGTCATCAGTCTGCCAATGGTGGTAGTGGTAATAACAATTACAACAACAATAATAATGGGTATAGTAATC
AAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAATAACCCATTTGGTAATGGTAATACTGGTAATGCTAGC
AGTGCGGCACCATCAAGCAGTGCTAACAACAATAATCAGGCTGACCCATTCGCTAATAATGGCGATCAAATTGATATCTC
GGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.767

100

0.648
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.404

100

0.544