Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HYO64_RS17370 Genome accession   NZ_CP058729
Coordinates   3628324..3629892 (+) Length   522 a.a.
NCBI ID   WP_057065334.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3623324..3634892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS17350 - 3623814..3625115 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  HYO64_RS17355 thrC 3625171..3626310 (+) 1140 WP_114153491.1 threonine synthase -
  HYO64_RS17360 pbpG 3626419..3627465 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  HYO64_RS17365 - 3627678..3628313 (+) 636 WP_000633799.1 response regulator transcription factor GacA -
  HYO64_RS17370 pilS 3628324..3629892 (+) 1569 WP_057065334.1 sensor histidine kinase Regulator
  HYO64_RS17375 pilR 3629917..3631338 (+) 1422 WP_096641157.1 sigma-54-dependent transcriptional regulator Regulator
  HYO64_RS17380 - 3631342..3632526 (-) 1185 WP_004842752.1 S41 family peptidase -
  HYO64_RS17385 gpmI 3632542..3634089 (-) 1548 WP_000128745.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59231.71 Da        Isoelectric Point: 6.4995

>NTDB_id=465084 HYO64_RS17370 WP_057065334.1 3628324..3629892(+) (pilS) [Acinetobacter baumannii strain M164-3]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHTDLFEILKFGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDVRHFIDTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNATDSPYITINIHSQANKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=465084 HYO64_RS17370 WP_057065334.1 3628324..3629892(+) (pilS) [Acinetobacter baumannii strain M164-3]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGCTATTCGCTCTTAAGTCTTGTTCAGCTGTTATGCTTTAAATTTATTGCCACTCAAGCCACGCGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTCTGAGTTTACTAACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
CTTACTCTATGTAATAGCCATCTTTACCTCGGCGATTTTACTCAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATCGCTGTTATTTACCAACGATTTGTAGGTAGTCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTTTTATTTTTTGTGGTTCACGGTATTGGCCAAATTGCTGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATTGAACTCTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTC
TAGATGAGAATTACGACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCTTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATACCGATTTATTTGAAATTTTAAAGTTTGGCGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCGTACTCCATCAACATTAAAGTGCAACACCTTTTGGTCCCACAACAAACGCTAACCCTGC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAACAGCTTAAGCTTGCTGCGCTAGGGCAACTCTCAGCAAGT
ATTGCACATGAGATCCGCAATCCTCTCGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGTCATATGATTGGCAAACAAACCAAACGCATTGATAGTATTGTTCAAGATACTTTAGGGCTTGCTCGTA
GCGAAAGAACACATCCTATCCAGATCGATGTAAGACACTTCATAGATACATTGCTCGAAGAAGATTTATTTGACGTTAAA
CATTCAATTCAACTTAAAATTTCGGATAGTTCTTTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATCAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCACCGACTCGCCGTACATTACGATCAACATTCATTCACAGGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

99.042

100

0.99