Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HYO64_RS02410 Genome accession   NZ_CP058729
Coordinates   503984..504619 (-) Length   211 a.a.
NCBI ID   WP_002125534.1    Uniprot ID   A0A429LTT3
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498984..509619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS02375 mlaE 499320..500096 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  HYO64_RS02380 - 500096..500776 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  HYO64_RS02385 - 500803..501444 (+) 642 WP_001093907.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  HYO64_RS02390 - 501456..501743 (+) 288 WP_000250997.1 STAS domain-containing protein -
  HYO64_RS02395 - 501813..502826 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  HYO64_RS02400 - 502984..503565 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  HYO64_RS02405 - 503580..503981 (+) 402 WP_114155235.1 NUDIX hydrolase -
  HYO64_RS02410 comF 503984..504619 (-) 636 WP_002125534.1 ComF family protein Machinery gene
  HYO64_RS02415 recG 504612..506657 (-) 2046 WP_114155237.1 ATP-dependent DNA helicase RecG -
  HYO64_RS02420 - 506678..507493 (+) 816 WP_114155239.1 NAD-dependent epimerase/dehydratase family protein -
  HYO64_RS02425 adeT2 507573..508559 (+) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24551.67 Da        Isoelectric Point: 9.7140

>NTDB_id=465058 HYO64_RS02410 WP_002125534.1 503984..504619(-) (comF) [Acinetobacter baumannii strain M164-3]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLVSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=465058 HYO64_RS02410 WP_002125534.1 503984..504619(-) (comF) [Acinetobacter baumannii strain M164-3]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTGTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429LTT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986