Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   JQC68_RS03640 Genome accession   NZ_CP069308
Coordinates   691608..693446 (-) Length   612 a.a.
NCBI ID   WP_021112525.1    Uniprot ID   -
Organism   Glaesserella parasuis strain EHP1804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 686608..698446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS03615 (JQC68_03615) - 687035..687874 (-) 840 WP_021109740.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  JQC68_RS03620 (JQC68_03620) ampD 687932..688498 (+) 567 WP_005714146.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  JQC68_RS03625 (JQC68_03625) - 688491..689399 (-) 909 WP_021109738.1 lysine exporter LysO family protein -
  JQC68_RS03630 (JQC68_03630) dinB 689543..690613 (+) 1071 WP_203399249.1 DNA polymerase IV -
  JQC68_RS03635 (JQC68_03635) htpX 690719..691570 (+) 852 WP_021113696.1 protease HtpX -
  JQC68_RS03640 (JQC68_03640) uvrC 691608..693446 (-) 1839 WP_021112525.1 excinuclease ABC subunit UvrC Machinery gene
  JQC68_RS03645 (JQC68_03645) pgsA 693542..694090 (-) 549 WP_078208521.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JQC68_RS03650 (JQC68_03650) modB 694245..694946 (+) 702 WP_035519983.1 molybdate ABC transporter permease subunit -
  JQC68_RS03655 (JQC68_03655) modC 694946..696007 (+) 1062 WP_203399250.1 molybdenum ABC transporter ATP-binding protein ModC -
  JQC68_RS03660 (JQC68_03660) sodA 696225..696845 (+) 621 WP_005714158.1 superoxide dismutase [Mn] -
  JQC68_RS03665 (JQC68_03665) - 697228..697843 (+) 616 Protein_710 IS1595 family transposase -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69526.60 Da        Isoelectric Point: 8.7716

>NTDB_id=464729 JQC68_RS03640 WP_021112525.1 691608..693446(-) (uvrC) [Glaesserella parasuis strain EHP1804]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTKHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDNYYKN
RSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQGKDQQVIEHLISKMETAAEDLDFEAAARFRDQIQQVRAVTE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HPVSEVEALEKVLSEQTGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKRYDKPLPPEKIPDIIFIDGGKGQLNRALETFA
NLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATFDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=464729 JQC68_RS03640 WP_021112525.1 691608..693446(-) (uvrC) [Glaesserella parasuis strain EHP1804]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACGCCACATAACCCTGGTGTTTATCGTATGTATGATGATAAAGG
CACGATCATCTATGTCGGTAAGGCAAAAGACTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCACTCTTGCCAGCCGAA
AAACTGAAGCCTTGGTATCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGTTGCTTCGTGATGATAAATCTTACCCTTATATTTTGCTCAC
CAAACACCAGCACCCACGTTTAGCCAGCTTTCGGGGAAGTAAAAAAATCGCAGGGGAATATTTTGGACCTTACCCAAATG
CAGGGGCGGTGCGGGAAACCTTAAATCTGCTACAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAACTACTACAAAAAC
CGTTCTCGCCCTTGTTTACAATATCAAATCGGGCGTTGCCTTGCCCCTTGCGTGGAAGGCGTTTATTCCCAACGAGAATA
CGATCAACAGGTGGAGTATGTTCGCTTATTCTTACAAGGTAAAGATCAGCAAGTGATCGAACATTTGATTAGCAAAATGG
AAACAGCAGCGGAAGATCTGGATTTTGAAGCTGCCGCGCGTTTTCGAGATCAAATTCAGCAGGTGCGAGCGGTCACTGAA
AAGCAATTTGTATCGAACGAACGCTTGGACGATCTCGATATTATTTCGATTGCCTATCAACACGGTATTGCTTGCGTGCA
TATTCTGTTTGTACGACAAGGGAAAGTGTTGGGTAGCCGAAGTTATTTCCCCAAAGTGCCGAACCATACGGAACTTGCTG
AATTGAGCGACACTTTTATCGGGCAGTTTTATTTGCAGATGAACCAACATCGCACCATTCCGCACCAAATCATTATCGAT
CACCCCGTGAGCGAAGTGGAAGCCTTAGAAAAGGTATTGTCGGAACAAACAGGACATAAAGTGAGTATTACCGATAAGGT
GCGAGGCGAAAAAAGCCGTTATCTTGCTCTTGCTAAAACCAACGCAATGGCAGCACTGACTTTGCAACTCAAGCAAGATG
CTCGTATCCAAACCCGTTATGAAGCCTTACAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGTTTCGACATC
AGTCATACGATGGGCGAACAAACAGTCGCTTCTTGTGTGGTATTTGATGAAAATGGACCGTTAAAATCCGATTATCGCCG
TTTCAATATTGAAGGCATTACGGGGGGCGATGATTATGCTGCAATGGAACAAGCCCTGCTCAAACGTTACGATAAACCGC
TTCCGCCTGAAAAAATCCCCGATATTATCTTTATTGACGGCGGAAAAGGGCAGTTAAACCGAGCCTTAGAAACCTTTGCC
AATCTCAAAGTGGAATGGGATAAATCCAAACCATTACTTATCGGCGTAGCAAAAGGCGTAGAACGCAAGGCAGGGTTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACTTACCGCCCGACAGCCCAGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGCGGTTTAGAGGCA
ATCGCTGGCGTTGGAGCCAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACATT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGACACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(204-236)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.459

99.02

0.371
  uvrC Streptococcus pneumoniae R6

37.129

99.02

0.368
  uvrC Streptococcus pneumoniae D39

37.129

99.02

0.368