Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   JQC68_RS02875 Genome accession   NZ_CP069308
Coordinates   513784..515034 (+) Length   416 a.a.
NCBI ID   WP_203399223.1    Uniprot ID   -
Organism   Glaesserella parasuis strain EHP1804     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 508784..520034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS02850 (JQC68_02850) rluB 509684..510703 (-) 1020 WP_005711758.1 23S rRNA pseudouridine(2605) synthase RluB -
  JQC68_RS02855 (JQC68_02855) - 510873..511493 (-) 621 WP_005711759.1 L-threonylcarbamoyladenylate synthase -
  JQC68_RS02860 (JQC68_02860) - 511968..512516 (+) 549 WP_234888270.1 SLC13 family permease -
  JQC68_RS02865 (JQC68_02865) - 512706..513095 (-) 390 WP_010787002.1 SufE family protein -
  JQC68_RS02870 (JQC68_02870) clpP 513196..513777 (+) 582 WP_005711766.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  JQC68_RS02875 (JQC68_02875) clpX 513784..515034 (+) 1251 WP_203399223.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  JQC68_RS02880 (JQC68_02880) dapE 515108..516241 (-) 1134 WP_160436358.1 succinyl-diaminopimelate desuccinylase -
  JQC68_RS02885 (JQC68_02885) - 516325..516993 (-) 669 WP_035491631.1 prepilin peptidase -
  JQC68_RS02890 (JQC68_02890) pilC 516990..518186 (-) 1197 WP_203399224.1 type II secretion system F family protein Machinery gene
  JQC68_RS02895 (JQC68_02895) pilB 518179..519564 (-) 1386 WP_203399225.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45732.45 Da        Isoelectric Point: 5.1796

>NTDB_id=464719 JQC68_RS02875 WP_203399223.1 513784..515034(+) (clpX) [Glaesserella parasuis strain EHP1804]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIEESYALINGTDELLIDANEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKDRQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAIAQKAISLKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVGKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=464719 JQC68_RS02875 WP_203399223.1 513784..515034(+) (clpX) [Glaesserella parasuis strain EHP1804]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGTGGAAAGCGTCGTAATGAAGTCGATGCGTTAATTGAAGGTAC
AGAAGGACATATTTGTAACGAATGTATTGAAGAGTCTTATGCGTTAATTAATGGAACTGATGAGCTATTGATTGATGCAA
ATGAGGCTGAGAGCCAAGATGTGTTAGGTAATGTGCCTACTCCACATGAAATTCACGCACATTTAGATGATTATGTGATC
GGGCAAGAACACGCTAAAAAGGTGTTGTCGGTTGCGGTTTATAACCACTACAAACGCTTACGCAATGCACTTTCTGACAA
TAAAGAGAGTGAAGGCGTTGAGTTGGGTAAAAGTAACATTTTGCTTATCGGCCCGACAGGAAGTGGTAAAACATTGTTAG
CAGAAACCTTGGCACGCCGTTTAAATGTGCCTTTTGCTGTGGCTGATGCAACAACGCTGACGCAAGCAGGCTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTATCAGGTGAAGGGGTTCAGC
AGGCATTACTTAAATTGATTGAAGGTACTATCGCGAATATCAATCCACAAGGCGGACGCAAACACCCGAAACAAGAAACA
ATCCCAGTTGATACCTCTAAAATTCTCTTTATCTGTGGCGGTGCATTTGCTGGGCTAGATAAAATTGTCGAAGCTCGAAC
GAATACACAAGGTGGAATTGGCTTTAAAGCAGAATTGAAAAAAGATAAAGATCGTCAAGCACTCACTGAATTATTCAAAC
AAGTTGAACCTGAAGATTTGGTGAAATTTGGTTTAATTCCAGAGCTAATCGGGCGTTTGCCTGTTATCACACCGCTTGAA
GAACTTGATGAGAAAGCACTTATTAACATTTTGACAGAGCCGAAAAATGCGATTATCAAGCAGTATCAAGCCTTGTTCAA
AATGGAAGGTGTGGAATTAAAATTCACCAAAGATGCTTTAGTGGCGATTGCTCAAAAAGCGATTTCTCTTAAAACAGGGG
CAAGGGGGCTACGTTCAATCGTGGAAAACTTGCTACTTGACACTATGTATGATTTACCGTCCTTGAAAGCAAGTAAAGTG
ACAGTGGGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCGAAGGTGGAGTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.718

98.798

0.55
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.922

98.077

0.529