Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   JQC68_RS01585 Genome accession   NZ_CP069308
Coordinates   286878..287219 (-) Length   113 a.a.
NCBI ID   WP_021112680.1    Uniprot ID   -
Organism   Glaesserella parasuis strain EHP1804     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281878..292219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS01555 (JQC68_01555) - 282700..283227 (-) 528 WP_035522822.1 DUF1523 family protein -
  JQC68_RS01560 (JQC68_01560) - 283267..284049 (-) 783 WP_016527622.1 TatD family hydrolase -
  JQC68_RS01565 (JQC68_01565) - 284063..284560 (-) 498 WP_203399176.1 GNAT family N-acetyltransferase -
  JQC68_RS01570 (JQC68_01570) - 284561..284839 (-) 279 WP_005714674.1 DUF1778 domain-containing protein -
  JQC68_RS01575 (JQC68_01575) epmA 284893..285873 (-) 981 WP_035495957.1 elongation factor P--(R)-beta-lysine ligase -
  JQC68_RS01580 (JQC68_01580) - 286013..286778 (+) 766 Protein_306 IS5 family transposase -
  JQC68_RS01585 (JQC68_01585) comEA/comE1 286878..287219 (-) 342 WP_021112680.1 ComEA family DNA-binding protein Machinery gene
  JQC68_RS01590 (JQC68_01590) - 287477..288742 (+) 1266 WP_021112664.1 LysM-like peptidoglycan-binding domain-containing protein -
  JQC68_RS01595 (JQC68_01595) - 288844..289200 (+) 357 WP_021111031.1 MliC family protein -
  JQC68_RS01600 (JQC68_01600) waaF 289209..290261 (+) 1053 WP_075630513.1 lipopolysaccharide heptosyltransferase II -
  JQC68_RS01605 (JQC68_01605) - 290357..290944 (+) 588 WP_035494230.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12447.29 Da        Isoelectric Point: 9.8973

>NTDB_id=464714 JQC68_RS01585 WP_021112680.1 286878..287219(-) (comEA/comE1) [Glaesserella parasuis strain EHP1804]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEHTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=464714 JQC68_RS01585 WP_021112680.1 286878..287219(-) (comEA/comE1) [Glaesserella parasuis strain EHP1804]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACATACACCGGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTCGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

99.115

100

0.991
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602