Detailed information NTG0464709

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: JQR77_RS09500
• Genome accession: NZ_CP069275
• Coordinates: 1846955..1848055 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain EG007
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1841955..1853055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQR77_RS09475 (JQR77_09505)	pgsA	1842493..1843035 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
JQR77_RS09480 (JQR77_09510)	-	1843048..1843905 (-)	858	WP_023910023.1	helix-turn-helix domain-containing protein	-
JQR77_RS09485 (JQR77_09515)	yfmH	1843964..1845245 (-)	1282	Protein_1817	EF-P 5-aminopentanol modification-associated protein YfmH	-
JQR77_RS09490 (JQR77_09520)	yfmF	1845247..1846497 (-)	1251	WP_023910024.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
JQR77_RS09495 (JQR77_09525)	yaaA	1846575..1846952 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
JQR77_RS09500 (JQR77_09530)	recF	1846955..1848055 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
JQR77_RS09505 (JQR77_09535)	guaB	1848224..1849705 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
JQR77_RS09510 (JQR77_09540)	trpS	1849882..1850904 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
JQR77_RS09515 (JQR77_09545)	-	1851332..1852204 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=464709 JQR77_RS09500 WP_002947786.1 1846955..1848055(+) (recF) [Streptococcus thermophilus strain EG007]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=464709 JQR77_RS09500 WP_002947786.1 1846955..1848055(+) (recF) [Streptococcus thermophilus strain EG007]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432