Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LeuG3613_RS04020 Genome accession   NZ_CP058617
Coordinates   803747..804289 (-) Length   180 a.a.
NCBI ID   WP_097002119.1    Uniprot ID   A0A9Q3SVI9
Organism   Leuconostoc gasicomitatum strain CBA3613     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 798747..809289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LeuG3613_RS04000 (LeuG3613_04000) dnaB 799261..800727 (-) 1467 WP_013231198.1 replicative DNA helicase -
  LeuG3613_RS04005 (LeuG3613_04005) rplI 800730..801182 (-) 453 WP_013231197.1 50S ribosomal protein L9 -
  LeuG3613_RS04010 (LeuG3613_04010) - 801249..803279 (-) 2031 WP_097002120.1 DHH family phosphoesterase -
  LeuG3613_RS04015 (LeuG3613_04015) rpsR 803425..803709 (-) 285 WP_010015960.1 30S ribosomal protein S18 -
  LeuG3613_RS04020 (LeuG3613_04020) ssb 803747..804289 (-) 543 WP_097002119.1 single-stranded DNA-binding protein Machinery gene
  LeuG3613_RS04025 (LeuG3613_04025) rpsF 804323..804619 (-) 297 WP_010382948.1 30S ribosomal protein S6 -
  LeuG3613_RS04030 (LeuG3613_04030) - 804786..805091 (-) 306 WP_010382950.1 hypothetical protein -
  LeuG3613_RS04035 (LeuG3613_04035) pepV 805141..806586 (-) 1446 WP_097002136.1 dipeptidase PepV -
  LeuG3613_RS04040 (LeuG3613_04040) - 806601..807431 (-) 831 WP_090090048.1 energy-coupling factor transporter transmembrane component T family protein -
  LeuG3613_RS04045 (LeuG3613_04045) - 807520..809205 (-) 1686 WP_013231195.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19517.24 Da        Isoelectric Point: 4.5580

>NTDB_id=464622 LeuG3613_RS04020 WP_097002119.1 803747..804289(-) (ssb) [Leuconostoc gasicomitatum strain CBA3613]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQAGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESDKRRAQNGTPEPSNNGGGFSAPSDNSFSGVDPFASANQNSNTQSTATNEAA
NPFAASGKTEIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=464622 LeuG3613_RS04020 WP_097002119.1 803747..804289(-) (ssb) [Leuconostoc gasicomitatum strain CBA3613]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGTGATGTGGAATTACGCTATACCCAATCGGGTACGGCTGTCGG
TACGTTTAGTTTGGCGGTTAACCGTCAGTTTACTAATCAAGCTGGTGAACGTGAAGCTGACTTTATTAATGCCGTTATTT
GGCGTAAAGCAGCTGAAAATTTTGCAAACTTTACTGGAAAAGGCGCTTTAGTTGCCGTTGAAGGTCGTTTGCAGACAAGA
AATTATGAAAACAACCAAGGACAACGTGTTTACGTTACTGAAGTTGTTGTTGATAATTTTTCATTACTTGAATCACGTGC
TGAAAGTGATAAGCGACGTGCCCAAAATGGCACGCCGGAACCATCTAATAATGGTGGTGGCTTCAGTGCACCAAGTGATA
ACTCATTTAGTGGTGTTGATCCATTTGCTAGTGCGAACCAAAATTCAAACACGCAATCAACTGCAACGAATGAAGCAGCT
AACCCATTTGCGGCTAGTGGCAAAACAGAAATTGATATATCAGATGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.903

100

0.65
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.778

100

0.528