Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   LLI11_RS13880 Genome accession   NZ_CP069223
Coordinates   829200..830195 (+) Length   331 a.a.
NCBI ID   WP_371400163.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain I.1.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 824200..835195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLI11_RS04205 (LLI11_04190) rpsA 825159..826385 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  LLI11_RS04210 (LLI11_04195) - 826536..827252 (+) 717 WP_003132595.1 nucleoside phosphorylase -
  LLI11_RS04215 (LLI11_04200) pnuC 827381..828094 (+) 714 WP_003132596.1 nicotinamide riboside transporter PnuC -
  LLI11_RS13875 uvrC 828189..829151 (+) 963 Protein_799 excinuclease ABC subunit UvrC -
  LLI11_RS13880 uvrC 829200..830195 (+) 996 WP_371400163.1 hypothetical protein Machinery gene
  LLI11_RS04225 (LLI11_04210) mutY 830359..831522 (+) 1164 WP_003132598.1 A/G-specific adenine glycosylase -
  LLI11_RS04230 (LLI11_04215) pepV 831588..833006 (+) 1419 WP_003132599.1 dipeptidase PepV -
  LLI11_RS04235 (LLI11_04220) acpS 833109..833468 (+) 360 WP_003132600.1 holo-ACP synthase -
  LLI11_RS04240 (LLI11_04225) alr 833513..834616 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37029.77 Da        Isoelectric Point: 10.1078

>NTDB_id=464545 LLI11_RS13880 WP_371400163.1 829200..830195(+) (uvrC) [Lactococcus lactis subsp. lactis strain I.1.1]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETALPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEADIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=464545 LLI11_RS13880 WP_371400163.1 829200..830195(+) (uvrC) [Lactococcus lactis subsp. lactis strain I.1.1]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAGCGTGATATTTTG
AAAACGACTAAAGCGGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAATCTTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCGCGAGCTTTA
AAAGAAGAAACGGCTCTTCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGATC
CTTTAGACGTGGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACCAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
ACATTCCTTATGAAGTAGCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.37

81.571

0.574
  uvrC Streptococcus pneumoniae D39

70.37

81.571

0.574
  uvrC Streptococcus pneumoniae TIGR4

70.37

81.571

0.574