Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CNCMI4319_RS09660 Genome accession   NZ_CP058603
Coordinates   205920..207860 (+) Length   646 a.a.
NCBI ID   WP_210153465.1    Uniprot ID   -
Organism   Bifidobacterium bifidum strain CNCM I-4319     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 200920..212860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNCMI4319_RS00815 (CNCMI4319_0160) - 201366..202358 (+) 993 WP_017143196.1 aldo/keto reductase -
  CNCMI4319_RS00820 - 202746..203033 (-) 288 WP_151909852.1 DUF1778 domain-containing protein -
  CNCMI4319_RS00825 (CNCMI4319_0161) - 203237..203767 (+) 531 WP_003817581.1 MarR family winged helix-turn-helix transcriptional regulator -
  CNCMI4319_RS00830 (CNCMI4319_0162) rcrP 203986..205869 (+) 1884 WP_013362999.1 ABC transporter ATP-binding protein Regulator
  CNCMI4319_RS09660 (CNCMI4319_0163) rcrQ 205920..207860 (+) 1941 WP_210153465.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 70444.13 Da        Isoelectric Point: 6.2929

>NTDB_id=464535 CNCMI4319_RS09660 WP_210153465.1 205920..207860(+) (rcrQ) [Bifidobacterium bifidum strain CNCM I-4319]
MGGGRTVEKPANFGNVMGKLVHYCRNYLPVIIIALVLGAAGTICQIIGPDKLKDMTNEIVKGLPAIVNGKPVMNSVDFNA
VGRIAWLLVALYVGYAVLSYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSL
GSLITSATLFVGALVMMFYNNVIMTLCAIGASILGLIIMMVIMKSSQKYFARQQMALGDVNGHIEEMYAGHLIVKAYNGE
ADSIRRFEKYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVIVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQ
AFQNLQRCAAAAERVFGFLEEPEMDAEPTKAELGVADAAASTARTDSGKLAHRGTRANATAGMTASQRSQLLGYDAAGNP
RTVRGDVEFSHVRFGYEPDKPIIHDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTTSVPRWNVH
DQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQIVSACKAVGLDHFVRSLPQGYDTVLDDNTSLSQGQRQLLTIARAMVQD
APILILDEATSSVDTRTEELIQKAMDALTVGRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNS
QFTLTD

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=464535 CNCMI4319_RS09660 WP_210153465.1 205920..207860(+) (rcrQ) [Bifidobacterium bifidum strain CNCM I-4319]
ATGGGCGGCGGCCGCACGGTCGAAAAGCCTGCCAATTTCGGCAACGTGATGGGCAAGCTCGTCCACTACTGCCGCAACTA
CCTGCCCGTCATCATCATTGCGCTCGTGCTGGGCGCGGCCGGCACGATATGCCAGATCATCGGACCGGACAAGCTCAAGG
ACATGACCAACGAGATCGTCAAGGGACTGCCGGCCATCGTGAACGGCAAGCCGGTGATGAACTCGGTCGATTTCAACGCC
GTCGGCCGCATCGCCTGGCTGCTCGTCGCACTGTACGTCGGCTACGCGGTGCTCAGCTACGTGCAAAGCTGGATGATGGC
GAACGTCACCCAGCGCACCGCCCAGCGCCTGCGCGAATCGATCTCGGTCAAAATCAACAAGCTGCCGCTCAAATACTTCG
ACAAGGTCAGCTACGGCGACGTACTCTCCCGCATCACCAACGACGTCGACGCCATCGGCCAGACGCTCGGCCAGTCCCTC
GGCTCGCTCATCACCTCGGCGACGCTGTTCGTTGGCGCGCTCGTCATGATGTTCTACAACAACGTCATCATGACCCTGTG
CGCGATCGGCGCGAGCATACTGGGACTCATCATCATGATGGTCATCATGAAATCCTCGCAGAAATACTTCGCCCGCCAGC
AGATGGCGCTCGGCGACGTCAACGGCCACATCGAGGAGATGTACGCCGGCCACCTCATCGTCAAGGCGTACAACGGCGAG
GCCGACTCAATCCGCCGCTTCGAGAAGTACAACGCCGACCTGTACGAATCCGGCTGGAAATCGCAGTTCCTGTCAGGTCT
GATGATGCCGTTGATGAACTTCGTCGGCAACTTCGGCTACGTGATCGTGTGCGTGGTCGGTGCGGCGCTCGCCATGGACG
GGCAGATCGAATTCGGCGTGATCGTCGCGTTCATGATGTACATCCGCCTATTCACCCAGCCGTTGAGCCAGTTCGCGCAG
GCGTTCCAGAACCTGCAGCGATGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTCGAAGAGCCGGAGATGGATGCGGA
ACCGACCAAGGCCGAACTCGGCGTGGCTGATGCCGCTGCGAGCACGGCACGGACGGACAGCGGCAAGCTGGCGCATCGCG
GCACTCGCGCGAATGCCACCGCCGGTATGACGGCTTCGCAGCGTTCGCAGCTGCTCGGCTACGATGCGGCCGGCAACCCC
CGGACCGTGCGCGGCGACGTCGAATTCAGTCACGTGCGATTCGGCTATGAGCCCGACAAGCCAATCATCCACGACTTCTC
GGCAAGCGTCTCCGCCGGCCAGAAAGTCGCCATCGTCGGTCCGACCGGCGCCGGCAAAACCACCATGGTCAACCTGCTGA
TGCGCTTCTACGAGATCTCCGGCGGCTCCATCTCCATCGACGGCATCGACACCACTTCCGTGCCGCGCTGGAACGTACAC
GACCAGTTCTCCATGGTCCTGCAGGATACATGGGTGTTCCGTGGCACCGTGCGCGAAAACATCGCCTACTCCAAGCCCGG
CGTCACCGACGAGCAGATCGTCTCCGCATGCAAGGCCGTCGGACTCGACCACTTCGTGCGCTCTCTGCCGCAGGGCTACG
ACACCGTGCTCGACGACAACACCTCGCTCTCCCAAGGACAGCGCCAGCTGCTCACCATCGCCCGCGCCATGGTGCAGGAC
GCTCCGATCCTCATCCTTGACGAAGCCACCTCCTCCGTCGACACCCGCACCGAAGAACTCATCCAAAAGGCCATGGATGC
GTTGACCGTGGGGCGCACGAGCTTCGTCATCGCGCACCGCCTCTCCACCATCCGCGACGCCGACATGATTCTCGTCATGA
ACCACGGCGACGTGATCGAGCGCGGTACCCACGAGGAACTGCTCGCGGCGGGAGGGTTTTACGCCGACCTCTACAACAGC
CAATTCACACTCACCGATTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(424-571)

ABC transporter transmembrane region (ABC_membrane)

(32-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.397

97.368

0.491