Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SAA6008_RS11530 Genome accession   NC_017341
Coordinates   2247107..2247502 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus str. JKD6008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2242107..2252502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6008_RS11500 (SAA6008_02129) thiE 2242707..2243348 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  SAA6008_RS11505 (SAA6008_02130) thiM 2243350..2244141 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  SAA6008_RS11510 (SAA6008_02131) thiD 2244125..2244955 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SAA6008_RS11515 (SAA6008_02132) tenA 2244948..2245637 (-) 690 WP_000396077.1 thiaminase II -
  SAA6008_RS11525 (SAA6008_02134) sceD 2246023..2246718 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  SAA6008_RS11530 (SAA6008_02135) ssb 2247107..2247502 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SAA6008_RS11535 (SAA6008_02136) - 2247696..2248136 (+) 441 WP_000846746.1 YwpF-like family protein -
  SAA6008_RS11540 (SAA6008_02137) fabZ 2248195..2248635 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SAA6008_RS11545 (SAA6008_02138) murA 2248669..2249934 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SAA6008_RS11550 (SAA6008_02139) - 2250045..2250278 (-) 234 WP_000384523.1 DUF1146 family protein -
  SAA6008_RS11555 - 2250410..2250502 (-) 93 WP_001790611.1 hypothetical protein -
  SAA6008_RS11560 (SAA6008_02140) - 2250840..2251244 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=46446 SAA6008_RS11530 WP_000932694.1 2247107..2247502(-) (ssb) [Staphylococcus aureus subsp. aureus str. JKD6008]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=46446 SAA6008_RS11530 WP_000932694.1 2247107..2247502(-) (ssb) [Staphylococcus aureus subsp. aureus str. JKD6008]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment