Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JQK31_RS09805 Genome accession   NZ_CP069133
Coordinates   1988184..1988840 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli BW25113 substr. CHXR2G20     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1983184..1993840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQK31_RS09775 (JQK31_09775) yecA 1984435..1985100 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  JQK31_RS09795 (JQK31_09795) pgsA 1985750..1986298 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JQK31_RS09800 (JQK31_09800) uvrC 1986355..1988187 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  JQK31_RS09805 (JQK31_09805) letA 1988184..1988840 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JQK31_RS22725 - 1988982..1989053 (+) 72 Protein_1948 transcriptional regulator -
  JQK31_RS09810 (JQK31_09810) yecU 1989136..1989312 (+) 177 WP_000590347.1 protein YecU -
  JQK31_RS09815 (JQK31_09815) yecF 1989299..1989523 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  JQK31_RS09820 (JQK31_09820) sdiA 1989591..1990313 (-) 723 WP_001152715.1 transcriptional regulator SdiA -
  JQK31_RS09825 (JQK31_09825) tcyN 1990543..1991295 (-) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JQK31_RS09830 (JQK31_09830) tcyL 1991292..1991960 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  JQK31_RS09835 (JQK31_09835) dcyD 1991975..1992961 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=464192 JQK31_RS09805 WP_000611335.1 1988184..1988840(-) (letA) [Escherichia coli BW25113 substr. CHXR2G20]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=464192 JQK31_RS09805 WP_000611335.1 1988184..1988840(-) (letA) [Escherichia coli BW25113 substr. CHXR2G20]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486