Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HYD32_RS09235 Genome accession   NZ_CP058345
Coordinates   1850464..1851030 (-) Length   188 a.a.
NCBI ID   WP_002815494.1    Uniprot ID   A0A223XQS1
Organism   Leuconostoc sp. MTCC 10508     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1845464..1856030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYD32_RS09215 dnaB 1846015..1847478 (-) 1464 WP_072614362.1 replicative DNA helicase -
  HYD32_RS09220 rplI 1847480..1847932 (-) 453 WP_042251058.1 50S ribosomal protein L9 -
  HYD32_RS09225 - 1847950..1849977 (-) 2028 WP_072614363.1 DHH family phosphoesterase -
  HYD32_RS09230 rpsR 1850148..1850432 (-) 285 WP_004911134.1 30S ribosomal protein S18 -
  HYD32_RS09235 ssb 1850464..1851030 (-) 567 WP_002815494.1 single-stranded DNA-binding protein Machinery gene
  HYD32_RS09240 rpsF 1851064..1851360 (-) 297 WP_011680503.1 30S ribosomal protein S6 -
  HYD32_RS09245 pepV 1851618..1853054 (-) 1437 WP_072614521.1 dipeptidase PepV -
  HYD32_RS09250 - 1853051..1853878 (-) 828 WP_072614364.1 energy-coupling factor transporter transmembrane protein EcfT -
  HYD32_RS09255 - 1853880..1855556 (-) 1677 WP_072614365.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20159.69 Da        Isoelectric Point: 4.5478

>NTDB_id=463969 HYD32_RS09235 WP_002815494.1 1850464..1851030(-) (ssb) [Leuconostoc sp. MTCC 10508]
MINRVVLIGRLTRDVELRYTQSGVAVGTFSLAVNRQFTNASGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNAGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSASNNGADNFSGSNDHSFGGNDNSFNGVDPFASASSNSNTQS
SASSNSAPNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=463969 HYD32_RS09235 WP_002815494.1 1850464..1851030(-) (ssb) [Leuconostoc sp. MTCC 10508]
ATGATTAATCGAGTAGTATTAATTGGGCGATTGACCCGTGATGTTGAATTACGTTACACACAATCAGGTGTAGCAGTCGG
TACGTTTAGCTTGGCGGTTAACCGTCAGTTCACCAACGCAAGTGGTGAACGTGAGGCTGACTTTATTAACGCCGTTATTT
GGCGAAAAGCAGCTGAAAACTTTGCAAACTTCACTGGAAAAGGTGCACTTGTGGCTGTTGAAGGTCGTTTGCAAACAAGA
AATTATGAAAATAATGCTGGCCAACGCGTTTACGTGACGGAAGTTGTTGTTGATAATTTCTCATTACTCGAATCTCGCGC
TGAAAGTGAAAAGCGTCGTTCTCAGAACGGATCATCGGCATCTAATAATGGTGCTGACAACTTCAGCGGATCAAACGATC
ATTCGTTTGGCGGTAATGATAACTCATTTAACGGTGTTGATCCTTTTGCAAGTGCGAGCTCAAACTCAAATACGCAATCA
TCAGCTTCGTCAAATAGTGCCCCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223XQS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.766

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.596

100

0.516