Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | HWQ57_RS01735 | Genome accession | NZ_CP058333 |
| Coordinates | 361583..362455 (-) | Length | 290 a.a. |
| NCBI ID | WP_017148550.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain ACR20 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 356583..367455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWQ57_RS01690 (HWQ57_01670) | - | 357444..357614 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| HWQ57_RS01695 (HWQ57_01675) | - | 357640..358089 (-) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| HWQ57_RS01700 (HWQ57_01680) | - | 358086..358715 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| HWQ57_RS01705 (HWQ57_01685) | - | 358848..359273 (+) | 426 | WP_016562341.1 | GNAT family N-acetyltransferase | - |
| HWQ57_RS01710 (HWQ57_01690) | - | 359270..359740 (+) | 471 | WP_023103507.1 | hypothetical protein | - |
| HWQ57_RS01715 (HWQ57_01695) | - | 359737..360426 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| HWQ57_RS01720 (HWQ57_01700) | - | 360532..360741 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| HWQ57_RS01725 (HWQ57_01705) | yacG | 360778..360978 (-) | 201 | WP_017148551.1 | DNA gyrase inhibitor YacG | - |
| HWQ57_RS01730 (HWQ57_01710) | coaE | 360975..361586 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| HWQ57_RS01735 (HWQ57_01715) | pilD | 361583..362455 (-) | 873 | WP_017148550.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| HWQ57_RS01740 (HWQ57_01720) | pilC | 362458..363675 (-) | 1218 | WP_023103506.1 | type II secretion system F family protein | Machinery gene |
| HWQ57_RS01745 (HWQ57_01725) | pilB | 363679..365382 (-) | 1704 | WP_023100230.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HWQ57_RS01750 | pilE | 365609..366145 (+) | 537 | WP_025921208.1 | pilin | Machinery gene |
| HWQ57_RS01755 (HWQ57_01730) | tfpZ | 366210..366947 (+) | 738 | WP_023110409.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31888.88 Da Isoelectric Point: 7.7068
>NTDB_id=463875 HWQ57_RS01735 WP_017148550.1 361583..362455(-) (pilD) [Pseudomonas aeruginosa strain ACR20]
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=463875 HWQ57_RS01735 WP_017148550.1 361583..362455(-) (pilD) [Pseudomonas aeruginosa strain ACR20]
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
53.791 |
95.517 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
51.071 |
96.552 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
51.071 |
96.552 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.571 |
96.552 |
0.469 |