Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   HPOK310_RS01840 Genome accession   NC_020509
Coordinates   375415..377376 (-) Length   653 a.a.
NCBI ID   WP_269448145.1    Uniprot ID   -
Organism   Helicobacter pylori OK310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 370415..382376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS01830 (HPOK310_0362) - 370533..373085 (-) 2553 WP_015428752.1 DNA translocase FtsK -
  HPOK310_RS01835 (HPOK310_0363) - 373082..375418 (-) 2337 WP_015428753.1 PD-(D/E)XK nuclease family protein -
  HPOK310_RS01840 (HPOK310_0364) recP/tkt 375415..377376 (-) 1962 WP_269448145.1 transketolase Machinery gene
  HPOK310_RS01845 (HPOK310_0365) - 377388..378230 (-) 843 WP_041199907.1 bifunctional riboflavin kinase/FAD synthetase -
  HPOK310_RS01850 (HPOK310_0366) - 378196..378903 (-) 708 WP_015428756.1 TlyA family RNA methyltransferase -
  HPOK310_RS01855 (HPOK310_0367) - 378903..379418 (-) 516 WP_015428757.1 hypothetical protein -
  HPOK310_RS01860 (HPOK310_0368) pyrB 379485..380408 (+) 924 WP_001124586.1 aspartate carbamoyltransferase -
  HPOK310_RS01865 (HPOK310_0369) hofB 380703..382142 (+) 1440 WP_015428758.1 outer membrane beta-barrel protein HofB -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72003.56 Da        Isoelectric Point: 6.7297

>NTDB_id=46362 HPOK310_RS01840 WP_269448145.1 375415..377376(-) (recP/tkt) [Helicobacter pylori OK310]
MAFKNLEKWKNLMRLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVF
SGGHASALAYSLLHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAI
SHKVYCLCGDGDLQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHN
ALEEAKKSTKPTLLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLRQSKENAQINPNESFIISPKSKMHFEEVKVRGVSLEA
LWEKSLSPKAKEKIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLG
QNLHFGIREHAMGAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHL
RALPNFYAFRPSDAFENTACMQIALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALE
SAKMLERENIPTQVVSVPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSV
ENITTQAKRLLNA

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=46362 HPOK310_RS01840 WP_269448145.1 375415..377376(-) (recP/tkt) [Helicobacter pylori OK310]
ATGGCTTTTAAAAACCTTGAAAAATGGAAAAATTTGATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGC
CAACACGCTGCGCTTTTTGTGTGCGGACATGATAGATAGGGCTAATAGTGGGCATCCGGGCGTGTGCTTGGGATTAGCCG
ATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAAACCCCACTAACCCTAAATGGCTCAATAGAGATAGGCTGGTTTTT
AGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTGTTGCATTTGTGGGGTTTTGATTTGAGCCTAGAAGATTTAAAGCG
TTTCAGGCAATTACACTCTAAAACCCCAGGACACCCCGAATTGCACCACACCGAAGGCATTGAGATCACGACTGGGCCTT
TGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCATGGCGAGCCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATT
TCTCATAAAGTCTATTGTTTGTGTGGGGATGGGGATTTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCAGGGCA
CCTCAACCTGAACAACCTCATTGTGATTTATGACAGCAACCAGATCAGCATTGAAGGCGCTATCAATATTAGTTTTAGCG
AACAGGTCAAGATGCGGTTTTTAGCGCAAAATTGGGAAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAAC
GCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACGCTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTT
AGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAATAAAGAAGTGTTAAGACAATCCAAAGAAAACGCTCAAATCAATC
CTAATGAAAGCTTTATCATTAGCCCAAAAAGCAAAATGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCT
TTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAAAAGATCCATGCGTTGAAGGATTTTGATTTTAGCGCCATCAATTA
CCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAGAGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCG
AGGGCTTTTTAGGGGGGAGCGCGGATTTAGCCCCATCCAATAATACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGG
CAAAACTTGCATTTTGGGATCAGAGAGCATGCCATGGGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCC
TTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTTGATGCCTAGCATTCGTTTGAGTGCTTTAATGAAACTAAAAGCCC
TTTTTATTTTTACGCATGACAGCATTGGCGTGGGCGAAGACGGGGCCACGCACCAACCCATAGAGCAATTGAGCCATTTG
CGTGCTTTGCCCAATTTCTACGCTTTCAGACCTAGCGATGCTTTTGAAAATACCGCTTGCATGCAAATAGCGTTAAGTTT
GAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAATTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAG
GCGCGTATGTTAAATATGATGCTAAAAATCCCGTTATCACGCTCGTTGCGAGCGGGAGCGAAGTTTCCTTGGCTTTAGAG
AGTGCTAAAATGTTAGAACGAGAAAATATCCCCACTCAAGTGGTGAGCGTGCCATGCTTTGATTTATTGGTGGAACAAGA
TGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGTTTTAGTGATTGAAGCGAGTCGCGCGATAGAGTGGTATCGTTTTG
CGGATAAAATCATTGGCATGGATTCTTTTGGGAGTTCAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTT
GAAAACATCACCACTCAAGCTAAAAGGTTACTCAACGCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(355-521)

Transketolase, C-terminal domain (Transketolase_C)

(536-589)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(24-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.014

99.694

0.409

Multiple sequence alignment