Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JNN58_RS03830 Genome accession   NZ_CP068827
Coordinates   775678..776334 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain RIVM_C030371     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 770678..781334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN58_RS03800 (JNN58_03800) yecA 771929..772594 (-) 666 WP_000847880.1 UPF0149 family protein YecA -
  JNN58_RS03820 (JNN58_03820) pgsA 773244..773792 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JNN58_RS03825 (JNN58_03825) uvrC 773849..775681 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  JNN58_RS03830 (JNN58_03830) letA 775678..776334 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JNN58_RS26170 - 776476..776592 (+) 117 WP_023063716.1 hypothetical protein -
  JNN58_RS03835 (JNN58_03835) yecU 776630..776806 (+) 177 WP_000590344.1 protein YecU -
  JNN58_RS03840 (JNN58_03840) yecF 776793..777017 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  JNN58_RS03845 (JNN58_03845) sdiA 777084..777806 (-) 723 WP_001154265.1 transcriptional regulator SdiA -
  JNN58_RS03850 (JNN58_03850) tcyN 778036..778788 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JNN58_RS03855 (JNN58_03855) tcyL 778785..779453 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  JNN58_RS03860 (JNN58_03860) dcyD 779468..780454 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=463605 JNN58_RS03830 WP_000611328.1 775678..776334(-) (letA) [Escherichia coli strain RIVM_C030371]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=463605 JNN58_RS03830 WP_000611328.1 775678..776334(-) (letA) [Escherichia coli strain RIVM_C030371]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTTGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482