Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SAA6159_RS10725 Genome accession   NC_017338
Coordinates   2170711..2171106 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JKD6159     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2165711..2176106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6159_RS10700 (SAA6159_02005) thiE 2166173..2166814 (-) 642 WP_000483146.1 thiamine phosphate synthase -
  SAA6159_RS10705 (SAA6159_02006) thiM 2166816..2167607 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  SAA6159_RS10710 (SAA6159_02007) thiD 2167591..2168421 (-) 831 WP_000594969.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SAA6159_RS10715 (SAA6159_02008) tenA 2168414..2169103 (-) 690 WP_000396065.1 thiaminase II -
  SAA6159_RS10720 (SAA6159_02009) sceD 2169628..2170323 (-) 696 WP_000752003.1 lytic transglycosylase SceD -
  SAA6159_RS10725 (SAA6159_02010) ssb 2170711..2171106 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SAA6159_RS10730 (SAA6159_02011) - 2171300..2171740 (+) 441 WP_000846750.1 YwpF-like family protein -
  SAA6159_RS10735 (SAA6159_02012) fabZ 2171797..2172237 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SAA6159_RS10740 (SAA6159_02013) murA 2172271..2173536 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SAA6159_RS10745 (SAA6159_02014) - 2173647..2173880 (-) 234 WP_000384523.1 DUF1146 family protein -
  SAA6159_RS10750 (SAA6159_03565) - 2174012..2174104 (-) 93 WP_044026099.1 hypothetical protein -
  SAA6159_RS10755 (SAA6159_02016) - 2174694..2175098 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=46358 SAA6159_RS10725 WP_000932694.1 2170711..2171106(-) (ssb) [Staphylococcus aureus subsp. aureus JKD6159]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=46358 SAA6159_RS10725 WP_000932694.1 2170711..2171106(-) (ssb) [Staphylococcus aureus subsp. aureus JKD6159]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment