Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HX738_RS03055 Genome accession   NZ_CP058299
Coordinates   590245..591018 (+) Length   257 a.a.
NCBI ID   WP_002874287.1    Uniprot ID   Q0PAN4
Organism   Campylobacter jejuni strain A9a     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 585245..596018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX738_RS03040 (HX738_03040) - 586094..588028 (-) 1935 WP_052801823.1 ribonuclease R family protein -
  HX738_RS03045 (HX738_03045) ilvC 588147..589169 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  HX738_RS03050 (HX738_03050) - 589173..590255 (+) 1083 WP_002882551.1 divergent polysaccharide deacetylase family protein -
  HX738_RS03055 (HX738_03055) dprA 590245..591018 (+) 774 WP_002874287.1 DNA-processing protein DprA Machinery gene
  HX738_RS03060 (HX738_03060) ruvX 591015..591398 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  HX738_RS03065 (HX738_03065) - 591427..592266 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  HX738_RS03070 (HX738_03070) msrA 592442..592939 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  HX738_RS03075 (HX738_03075) ppa 592981..593499 (-) 519 WP_002867724.1 inorganic diphosphatase -
  HX738_RS03080 (HX738_03080) adk 593509..594087 (-) 579 WP_002859580.1 adenylate kinase -
  HX738_RS03085 (HX738_03085) aspS 594084..595835 (-) 1752 WP_177640513.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28774.64 Da        Isoelectric Point: 7.6510

>NTDB_id=463562 HX738_RS03055 WP_002874287.1 590245..591018(+) (dprA) [Campylobacter jejuni strain A9a]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=463562 HX738_RS03055 WP_002874287.1 590245..591018(+) (dprA) [Campylobacter jejuni strain A9a]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTACT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATGAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1
  dprA Helicobacter pylori 26695

48.75

93.385

0.455