Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   HX740_RS07005 Genome accession   NZ_CP058293
Coordinates   1385539..1386717 (-) Length   392 a.a.
NCBI ID   WP_002869197.1    Uniprot ID   Q7WYI6
Organism   Campylobacter jejuni strain D33a     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380539..1391717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX740_RS06975 (HX740_06970) - 1381080..1381421 (+) 342 WP_002869194.1 hypothetical protein -
  HX740_RS06980 (HX740_06975) flgM 1381484..1381681 (+) 198 WP_002869195.1 flagellar biosynthesis anti-sigma factor FlgM -
  HX740_RS06985 (HX740_06980) - 1381724..1382158 (+) 435 WP_002779263.1 flagellar protein FlgN -
  HX740_RS06990 (HX740_06985) flgK 1382168..1383994 (+) 1827 WP_002869196.1 flagellar hook-associated protein FlgK -
  HX740_RS06995 (HX740_06990) - 1384011..1384774 (+) 764 Protein_1360 TIGR02757 family protein -
  HX740_RS07000 (HX740_06995) - 1384778..1385542 (+) 765 WP_002855301.1 TSUP family transporter -
  HX740_RS07005 (HX740_07000) ctsF 1385539..1386717 (-) 1179 WP_002869197.1 type II secretion system F family protein Machinery gene
  HX740_RS07010 (HX740_07005) ctsE 1386714..1388273 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  HX740_RS07015 (HX740_07010) ctsX 1388263..1388850 (-) 588 WP_002851370.1 membrane protein Machinery gene
  HX740_RS07020 (HX740_07015) ctsP 1388854..1389462 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HX740_RS07025 (HX740_07020) ctsD 1389455..1390867 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HX740_RS07030 (HX740_07025) ctsR 1390845..1391156 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45698.29 Da        Isoelectric Point: 9.0938

>NTDB_id=463549 HX740_RS07005 WP_002869197.1 1385539..1386717(-) (ctsF) [Campylobacter jejuni strain D33a]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=463549 HX740_RS07005 WP_002869197.1 1385539..1386717(-) (ctsF) [Campylobacter jejuni strain D33a]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGTGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCGGGGGTCAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

100

100

1