Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   HX740_RS07020 Genome accession   NZ_CP058293
Coordinates   1388854..1389462 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain D33a     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383854..1394462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX740_RS06995 (HX740_06990) - 1384011..1384774 (+) 764 Protein_1360 TIGR02757 family protein -
  HX740_RS07000 (HX740_06995) - 1384778..1385542 (+) 765 WP_002855301.1 TSUP family transporter -
  HX740_RS07005 (HX740_07000) ctsF 1385539..1386717 (-) 1179 WP_002869197.1 type II secretion system F family protein Machinery gene
  HX740_RS07010 (HX740_07005) ctsE 1386714..1388273 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  HX740_RS07015 (HX740_07010) ctsX 1388263..1388850 (-) 588 WP_002851370.1 membrane protein Machinery gene
  HX740_RS07020 (HX740_07015) ctsP 1388854..1389462 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HX740_RS07025 (HX740_07020) ctsD 1389455..1390867 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HX740_RS07030 (HX740_07025) ctsR 1390845..1391156 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=463552 HX740_RS07020 WP_002851464.1 1388854..1389462(-) (ctsP) [Campylobacter jejuni strain D33a]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=463552 HX740_RS07020 WP_002851464.1 1388854..1389462(-) (ctsP) [Campylobacter jejuni strain D33a]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995