Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HTZ92_RS00595 Genome accession   NZ_CP058289
Coordinates   117805..118623 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112805..123623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ92_RS00560 - 113387..113517 (-) 131 Protein_103 hypothetical protein -
  HTZ92_RS00565 (HTZ92_0105) rpoZ 113556..113834 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HTZ92_RS00570 (HTZ92_0106) gmk 113907..114536 (-) 630 WP_000015937.1 guanylate kinase -
  HTZ92_RS00575 (HTZ92_0107) ispH 114659..115609 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HTZ92_RS00580 (HTZ92_0108) fimU 115779..116252 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HTZ92_RS00585 (HTZ92_0109) pilV 116246..116806 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HTZ92_RS00590 (HTZ92_0110) pilW 116807..117808 (+) 1002 WP_000079195.1 PilW family protein Machinery gene
  HTZ92_RS00595 (HTZ92_0111) pilX 117805..118623 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HTZ92_RS00600 (HTZ92_0112) pilY1 118635..122489 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  HTZ92_RS00605 (HTZ92_0113) pilY2 122502..122984 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  HTZ92_RS00610 (HTZ92_0114) pilE 122981..123406 (+) 426 WP_000788344.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=463490 HTZ92_RS00595 WP_000149377.1 117805..118623(+) (pilX) [Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=463490 HTZ92_RS00595 WP_000149377.1 117805..118623(+) (pilX) [Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGAAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989