Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HTZ92_RS00585 Genome accession   NZ_CP058289
Coordinates   116246..116806 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111246..121806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ92_RS00560 - 113387..113517 (-) 131 Protein_103 hypothetical protein -
  HTZ92_RS00565 (HTZ92_0105) rpoZ 113556..113834 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HTZ92_RS00570 (HTZ92_0106) gmk 113907..114536 (-) 630 WP_000015937.1 guanylate kinase -
  HTZ92_RS00575 (HTZ92_0107) ispH 114659..115609 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HTZ92_RS00580 (HTZ92_0108) fimU 115779..116252 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HTZ92_RS00585 (HTZ92_0109) pilV 116246..116806 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HTZ92_RS00590 (HTZ92_0110) pilW 116807..117808 (+) 1002 WP_000079195.1 PilW family protein Machinery gene
  HTZ92_RS00595 (HTZ92_0111) pilX 117805..118623 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=463488 HTZ92_RS00585 WP_002194578.1 116246..116806(+) (pilV) [Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=463488 HTZ92_RS00585 WP_002194578.1 116246..116806(+) (pilV) [Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414