Detailed information NTG0463478

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HWU09_RS07615
• Genome accession: NZ_CP058287
• Coordinates: 1604905..1605960 (-)
• Length: 351 a.a.
• NCBI ID: WP_237003960.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain AL04
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1599905..1610960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU09_RS07590	-	1600466..1601878 (-)	1413	WP_237003406.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HWU09_RS07595	comB10	1601945..1603081 (-)	1137	WP_237003407.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU09_RS07600	comB9	1603074..1604036 (-)	963	WP_237003408.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU09_RS07605	comB8	1604036..1604779 (-)	744	WP_237003409.1	type IV secretion system protein	Machinery gene
HWU09_RS07610	comB7	1604776..1604889 (-)	114	WP_001217868.1	hypothetical protein	Machinery gene
HWU09_RS07615	comB6	1604905..1605960 (-)	1056	WP_237003960.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU09_RS07620	-	1605968..1606963 (-)	996	WP_237003961.1	PDZ domain-containing protein	-
HWU09_RS07625	-	1606963..1607256 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HWU09_RS07630	panD	1607267..1607617 (-)	351	WP_237003410.1	aspartate 1-decarboxylase	-
HWU09_RS07635	-	1607607..1609826 (-)	2220	WP_237003411.1	AAA family ATPase	-
HWU09_RS07640	-	1609826..1610101 (-)	276	WP_165536201.1	ATP-dependent Clp protease adaptor ClpS	-
HWU09_RS07645	-	1610132..1610545 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 40091.12 Da
• Isoelectric Point: 9.0418

>NTDB_id=463478 HWU09_RS07615 WP_237003960.1 1604905..1605960(-) (comB6) [Helicobacter pylori strain AL04]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALMEALWFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVFVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATHLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=463478 HWU09_RS07615 WP_237003960.1 1604905..1605960(-) (comB6) [Helicobacter pylori strain AL04]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCCAGCGCGCTAATGGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTGGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGTTTGTGTGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCCATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CAACCCCACCCGCTTCCTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954