Detailed information NTG0463474

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HWU09_RS07595
• Genome accession: NZ_CP058287
• Coordinates: 1601945..1603081 (-)
• Length: 378 a.a.
• NCBI ID: WP_237003407.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain AL04
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1596945..1608081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU09_RS07575	hypE	1597171..1598169 (+)	999	WP_237003403.1	hydrogenase expression/formation protein HypE	-
HWU09_RS07580	-	1598385..1599317 (-)	933	WP_237003404.1	GDP-L-fucose synthase family protein	-
HWU09_RS07585	gmd	1599310..1600455 (-)	1146	WP_237003405.1	GDP-mannose 4,6-dehydratase	-
HWU09_RS07590	-	1600466..1601878 (-)	1413	WP_237003406.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HWU09_RS07595	comB10	1601945..1603081 (-)	1137	WP_237003407.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU09_RS07600	comB9	1603074..1604036 (-)	963	WP_237003408.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU09_RS07605	comB8	1604036..1604779 (-)	744	WP_237003409.1	type IV secretion system protein	Machinery gene
HWU09_RS07610	comB7	1604776..1604889 (-)	114	WP_001217868.1	hypothetical protein	Machinery gene
HWU09_RS07615	comB6	1604905..1605960 (-)	1056	WP_237003960.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU09_RS07620	-	1605968..1606963 (-)	996	WP_237003961.1	PDZ domain-containing protein	-
HWU09_RS07625	-	1606963..1607256 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HWU09_RS07630	panD	1607267..1607617 (-)	351	WP_237003410.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42083.68 Da
• Isoelectric Point: 9.9837

>NTDB_id=463474 HWU09_RS07595 WP_237003407.1 1601945..1603081(-) (comB10) [Helicobacter pylori strain AL04]
MNKWLKGALVFAGGFATIVTISLIYHQKPKAPLNNQQNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKT
ALKALNSKEMNSSKEETFKSPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGVDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=463474 HWU09_RS07595 WP_237003407.1 1601945..1603081(-) (comB10) [Helicobacter pylori strain AL04]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGCAGGAGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACAAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAACC
GCTTTAAAAGCCCTAAACTCTAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCAATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAGTCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGTAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGAATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
AATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATTTTTTTCCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.767	100	0.958