Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HWU09_RS00650 Genome accession   NZ_CP058287
Coordinates   124986..125561 (-) Length   191 a.a.
NCBI ID   WP_237003507.1    Uniprot ID   -
Organism   Helicobacter pylori strain AL04     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119986..130561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU09_RS00640 - 121709..122920 (-) 1212 WP_237003505.1 restriction endonuclease subunit S -
  HWU09_RS00645 - 122917..124953 (-) 2037 WP_237003506.1 N-6 DNA methylase -
  HWU09_RS00650 comFC 124986..125561 (-) 576 WP_237003507.1 ComF family protein Machinery gene
  HWU09_RS00655 tmk 125549..126124 (-) 576 WP_237003508.1 dTMP kinase -
  HWU09_RS00660 coaD 126126..126599 (-) 474 WP_187859706.1 pantetheine-phosphate adenylyltransferase -
  HWU09_RS00665 - 126599..127162 (-) 564 WP_000780111.1 UbiX family flavin prenyltransferase -
  HWU09_RS00670 flgA 127172..127828 (-) 657 WP_237003509.1 flagellar basal body P-ring formation chaperone FlgA -
  HWU09_RS00675 uvrD 127825..129864 (-) 2040 WP_237003510.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21244.85 Da        Isoelectric Point: 9.1241

>NTDB_id=463463 HWU09_RS00650 WP_237003507.1 124986..125561(-) (comFC) [Helicobacter pylori strain AL04]
MRCLTCLKLSFKPLCSNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRAANTVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=463463 HWU09_RS00650 WP_237003507.1 124986..125561(-) (comFC) [Helicobacter pylori strain AL04]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAATTTGTGAAAATCCTGAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTGCTAATACTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCCCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

92.67

100

0.927
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.751

100

0.361