Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HWU11_RS07360 | Genome accession | NZ_CP058285 |
| Coordinates | 1526689..1527264 (+) | Length | 191 a.a. |
| NCBI ID | WP_237008411.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BT302 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1521689..1532264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWU11_RS07335 | uvrD | 1522380..1524425 (+) | 2046 | WP_237008408.1 | DNA helicase UvrD | - |
| HWU11_RS07340 | flgA | 1524422..1525078 (+) | 657 | WP_237008409.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HWU11_RS07345 | - | 1525088..1525651 (+) | 564 | WP_000780116.1 | UbiX family flavin prenyltransferase | - |
| HWU11_RS07350 | coaD | 1525651..1526124 (+) | 474 | WP_001169275.1 | pantetheine-phosphate adenylyltransferase | - |
| HWU11_RS07355 | tmk | 1526126..1526701 (+) | 576 | WP_237008410.1 | dTMP kinase | - |
| HWU11_RS07360 | comFC | 1526689..1527264 (+) | 576 | WP_237008411.1 | ComF family protein | Machinery gene |
| HWU11_RS07365 | - | 1527297..1529321 (+) | 2025 | WP_237008412.1 | HsdM family class I SAM-dependent methyltransferase | - |
| HWU11_RS07370 | - | 1529333..1530004 (+) | 672 | Protein_1443 | restriction endonuclease subunit S | - |
| HWU11_RS07375 | - | 1529992..1530513 (+) | 522 | WP_237008414.1 | restriction endonuclease | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21489.13 Da Isoelectric Point: 9.0978
>NTDB_id=463462 HWU11_RS07360 WP_237008411.1 1526689..1527264(+) (comFC) [Helicobacter pylori strain BT302]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVRILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAINTISYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVRILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAINTISYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=463462 HWU11_RS07360 WP_237008411.1 1526689..1527264(+) (comFC) [Helicobacter pylori strain BT302]
ATGCGTTGTTTAACTTGCTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAGAATCTTACAAGAACAGGGC
TTGAATATTCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGCGTTTAAGAGCTATTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGAATTTCACTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTGGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATCAAAACGCATTTCGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGCTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAGAATCTTACAAGAACAGGGC
TTGAATATTCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGCGTTTAAGAGCTATTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGAATTTCACTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTGGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATCAAAACGCATTTCGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |