Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HWU15_RS07175 Genome accession   NZ_CP058281
Coordinates   1498476..1499051 (-) Length   191 a.a.
NCBI ID   WP_237015390.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hk711     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493476..1504051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS07165 - 1495205..1496407 (-) 1203 WP_237015388.1 restriction endonuclease subunit S -
  HWU15_RS07170 - 1496404..1498443 (-) 2040 WP_237015389.1 HsdM family class I SAM-dependent methyltransferase -
  HWU15_RS07175 comFC 1498476..1499051 (-) 576 WP_237015390.1 ComF family protein Machinery gene
  HWU15_RS07180 tmk 1499039..1499614 (-) 576 WP_187851944.1 dTMP kinase -
  HWU15_RS07185 coaD 1499616..1500089 (-) 474 WP_015086602.1 pantetheine-phosphate adenylyltransferase -
  HWU15_RS07190 - 1500089..1500652 (-) 564 WP_000780116.1 UbiX family flavin prenyltransferase -
  HWU15_RS07195 flgA 1500662..1501318 (-) 657 WP_237015391.1 flagellar basal body P-ring formation chaperone FlgA -
  HWU15_RS07200 uvrD 1501315..1503360 (-) 2046 WP_237015392.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21334.06 Da        Isoelectric Point: 9.8031

>NTDB_id=463439 HWU15_RS07175 WP_237015390.1 1498476..1499051(-) (comFC) [Helicobacter pylori strain Hk711]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAKFVKILKEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRASNTISYAGKSLEFRANNPRNFTFKGDKSLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=463439 HWU15_RS07175 WP_237015390.1 1498476..1499051(-) (comFC) [Helicobacter pylori strain Hk711]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCAAAATTTGTGAAAATCCTAAAAGAAAAAGGC
TTGAACACTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAGTTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCAATCGCACTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.788

100

0.372