Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   SAA6159_RS07750 Genome accession   NC_017338
Coordinates   1620999..1622069 (-) Length   356 a.a.
NCBI ID   WP_000776405.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JKD6159     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1615999..1627069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6159_RS07710 (SAA6159_01471) gcvPA 1616176..1617522 (-) 1347 WP_000019682.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAA6159_RS07715 (SAA6159_01472) gcvT 1617542..1618633 (-) 1092 WP_000093352.1 glycine cleavage system aminomethyltransferase GcvT -
  SAA6159_RS07720 (SAA6159_01473) - 1618792..1619316 (-) 525 WP_001015120.1 shikimate kinase -
  SAA6159_RS07725 (SAA6159_03155) - 1619306..1619452 (-) 147 WP_001789879.1 hypothetical protein -
  SAA6159_RS07730 (SAA6159_01474) comGF 1619549..1620046 (-) 498 WP_078055779.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAA6159_RS07735 (SAA6159_01475) comGE 1619964..1620263 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SAA6159_RS07740 (SAA6159_01476) comGD 1620250..1620696 (-) 447 WP_014532765.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAA6159_RS07745 (SAA6159_01477) comGC 1620674..1620985 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAA6159_RS07750 (SAA6159_01478) comGB 1620999..1622069 (-) 1071 WP_000776405.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAA6159_RS07755 (SAA6159_01479) comGA 1622041..1623015 (-) 975 WP_000697229.1 competence type IV pilus ATPase ComGA Machinery gene
  SAA6159_RS07760 (SAA6159_01480) - 1623067..1623690 (-) 624 WP_001223005.1 MBL fold metallo-hydrolase -
  SAA6159_RS07765 (SAA6159_01481) - 1623687..1624016 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAA6159_RS07770 (SAA6159_01482) - 1624016..1625002 (-) 987 WP_000161306.1 ROK family glucokinase -
  SAA6159_RS07775 (SAA6159_01483) - 1624999..1625202 (-) 204 WP_000087561.1 YqgQ family protein -
  SAA6159_RS07780 (SAA6159_01484) - 1625183..1626646 (-) 1464 WP_001017875.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41401.86 Da        Isoelectric Point: 10.1030

>NTDB_id=46342 SAA6159_RS07750 WP_000776405.1 1620999..1622069(-) (comGB) [Staphylococcus aureus subsp. aureus JKD6159]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGATILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=46342 SAA6159_RS07750 WP_000776405.1 1620999..1622069(-) (comGB) [Staphylococcus aureus subsp. aureus JKD6159]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGGCAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA
AAAATAAGCAATTAGGTGCCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTAAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAATTGAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTCGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.157

100

0.992
  comGB Staphylococcus aureus N315

99.157

100

0.992

Multiple sequence alignment