Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CQZ96_RS15675 Genome accession   NZ_CP058272
Coordinates   3367408..3368037 (-) Length   209 a.a.
NCBI ID   WP_105714586.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362408..3373037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS15640 (CQZ96_015670) mlaE 3362561..3363340 (+) 780 WP_004725633.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  CQZ96_RS15645 (CQZ96_015675) - 3363340..3364017 (+) 678 WP_105714588.1 outer membrane lipid asymmetry maintenance protein MlaD -
  CQZ96_RS15650 (CQZ96_015680) - 3364039..3364659 (+) 621 WP_004725637.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  CQZ96_RS15655 (CQZ96_015685) - 3364687..3364974 (+) 288 WP_004725639.1 anti-sigma factor antagonist -
  CQZ96_RS15660 (CQZ96_015690) - 3365090..3366103 (-) 1014 WP_004725641.1 magnesium and cobalt transport protein CorA -
  CQZ96_RS15665 (CQZ96_015695) - 3366262..3366879 (+) 618 WP_105714587.1 TIGR00730 family Rossman fold protein -
  CQZ96_RS15670 (CQZ96_015700) - 3366957..3367355 (+) 399 WP_171287956.1 NUDIX hydrolase -
  CQZ96_RS15675 (CQZ96_015705) comF 3367408..3368037 (-) 630 WP_105714586.1 ComF family protein Machinery gene
  CQZ96_RS15680 (CQZ96_015710) recG 3368258..3370303 (-) 2046 WP_105714585.1 ATP-dependent DNA helicase RecG -
  CQZ96_RS15685 (CQZ96_015715) - 3370363..3371139 (+) 777 WP_105714584.1 NAD(P)H-binding protein -
  CQZ96_RS15690 (CQZ96_015720) - 3371197..3372132 (+) 936 WP_105714583.1 SEL1-like repeat protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24498.70 Da        Isoelectric Point: 9.3647

>NTDB_id=463371 CQZ96_RS15675 WP_105714586.1 3367408..3368037(-) (comF) [Acinetobacter sp. MYb10]
MLQFINQLLHKSIQSLSPCLLCGIDRQQQHSLCNTCWNELPWYKQHIERHQHQILCAHRYDFPIDRIIQVYKYEQQLQYQ
TLLAQSLLNLNLPKIQAIVPMPISTARLKERGYNQMLIIAKIMARQLNIPVWQPVIREAQHSQKGLSRIERLENIEYQFK
MIKTEKRKYKKVLIIDDVVTTGSSIHALTHALENLGCQQIYSVCIAAAQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=463371 CQZ96_RS15675 WP_105714586.1 3367408..3368037(-) (comF) [Acinetobacter sp. MYb10]
ATGCTCCAATTTATCAATCAACTTCTCCATAAAAGCATACAAAGCCTTTCCCCTTGCCTCCTTTGTGGAATAGACCGACA
ACAACAGCATTCCCTTTGTAACACGTGTTGGAACGAACTTCCTTGGTATAAGCAGCATATAGAACGGCATCAACACCAGA
TTCTTTGTGCTCACCGTTACGACTTCCCAATTGATCGCATCATCCAAGTCTATAAATATGAACAACAACTGCAATATCAG
ACACTATTGGCACAAAGTTTATTGAATTTAAACCTACCTAAAATTCAAGCCATTGTCCCTATGCCAATTTCTACTGCTCG
TTTAAAAGAACGCGGCTACAATCAAATGCTGATTATTGCCAAAATCATGGCAAGGCAATTAAATATCCCGGTATGGCAAC
CCGTGATTCGAGAGGCGCAACACTCACAAAAAGGTTTAAGTAGAATTGAGCGCTTAGAAAATATTGAATATCAATTTAAA
ATGATCAAAACAGAAAAAAGAAAATATAAAAAAGTACTGATTATTGACGATGTCGTGACCACAGGCAGTTCAATTCATGC
TTTAACCCATGCGTTAGAAAACTTAGGCTGCCAGCAGATTTATAGTGTCTGTATTGCCGCAGCTCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.33

100

0.593
  comF Acinetobacter baumannii D1279779

58.852

100

0.589