Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JNN66_RS22445 Genome accession   NZ_CP068823
Coordinates   4746256..4747665 (+) Length   469 a.a.
NCBI ID   WP_001188777.1    Uniprot ID   Q32A39
Organism   Escherichia coli strain RIVM_C029494     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4741256..4752665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN66_RS22430 (JNN66_22430) typA 4741416..4743239 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  JNN66_RS22435 (JNN66_22435) glnA 4743612..4745021 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  JNN66_RS22440 (JNN66_22440) glnL 4745195..4746244 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  JNN66_RS22445 (JNN66_22445) luxO 4746256..4747665 (+) 1410 WP_001188777.1 nitrogen regulation protein NR(I) Regulator
  JNN66_RS22450 (JNN66_22450) yshB 4747777..4747887 (+) 111 WP_000893994.1 YshB family small membrane protein -
  JNN66_RS22455 (JNN66_22455) hemN 4748115..4749488 (-) 1374 WP_000116109.1 oxygen-independent coproporphyrinogen III oxidase -
  JNN66_RS22460 (JNN66_22460) yihI 4749677..4750186 (-) 510 WP_001572146.1 Der GTPase-activating protein YihI -
  JNN66_RS23635 - 4750305..4750471 (-) 167 Protein_4424 hypothetical protein -
  JNN66_RS22465 (JNN66_22465) yihA 4750768..4751400 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52254.74 Da        Isoelectric Point: 6.4561

>NTDB_id=463344 JNN66_RS22445 WP_001188777.1 4746256..4747665(+) (luxO) [Escherichia coli strain RIVM_C029494]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=463344 JNN66_RS22445 WP_001188777.1 4746256..4747665(+) (luxO) [Escherichia coli strain RIVM_C029494]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACAACATTTGAGAACGGCGCGGAGGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGCCATTATCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCGTTTATCGCGCTGAATATGGCAGCTATCCCAAAAGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGCGGTACATTATTCCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTTGAACAGCGGGTGCAGGAAGGTAAGTTCC
GCGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCACTGCGTGAGCGTCGGGAAGATATTCCCCGC
CTGGCACGCCATTTTTTACAGGTTGCCGCGCGCGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGTCGCTGGCTAACAGTGATGGCCGCCGGGC
AGGAAGTGTTGATTCAGGATTTGCCCGGTGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCTCAAATGCAACCGGAC
AGTTGGGCGACACTTTTAGCGCAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAACCTGCTTTCCGAAGCGCAGCC
TGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGGCGTAACACTCTGACGCGGAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32A39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392