Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HW576_RS26025 Genome accession   NZ_CP058262
Coordinates   5009934..5010431 (-) Length   165 a.a.
NCBI ID   WP_256738028.1    Uniprot ID   -
Organism   Priestia megaterium strain BIM B-1314D     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5004934..5015431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW576_RS25990 (HW576_25990) csrA 5005350..5005580 (-) 231 WP_013059760.1 carbon storage regulator CsrA -
  HW576_RS25995 (HW576_25995) fliW 5005605..5006027 (-) 423 WP_013059761.1 flagellar assembly protein FliW -
  HW576_RS26000 (HW576_26000) flgL 5006109..5006990 (-) 882 WP_013059762.1 flagellar hook-associated protein FlgL -
  HW576_RS26005 (HW576_26005) flgK 5006993..5008543 (-) 1551 WP_098277598.1 flagellar hook-associated protein FlgK -
  HW576_RS26010 (HW576_26010) - 5008562..5009023 (-) 462 WP_223269021.1 flagellar protein FlgN -
  HW576_RS26015 (HW576_26015) flgM 5009045..5009299 (-) 255 WP_029319359.1 flagellar biosynthesis anti-sigma factor FlgM -
  HW576_RS26020 (HW576_26020) - 5009459..5009872 (-) 414 WP_013059766.1 TIGR03826 family flagellar region protein -
  HW576_RS26025 (HW576_26025) comFC 5009934..5010431 (-) 498 WP_256738028.1 phosphoribosyltransferase family protein Machinery gene
  HW576_RS26030 (HW576_26030) - 5010623..5012131 (-) 1509 WP_098196942.1 DEAD/DEAH box helicase -
  HW576_RS26035 (HW576_26035) - 5012211..5013056 (-) 846 WP_013059769.1 DegV family protein -
  HW576_RS26040 (HW576_26040) - 5013163..5013600 (-) 438 WP_013059770.1 YaaR family protein -
  HW576_RS26045 (HW576_26045) fliS 5013720..5014151 (-) 432 WP_013059771.1 flagellar export chaperone FliS -
  HW576_RS26050 (HW576_26050) - 5014575..5015258 (-) 684 WP_013059772.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19265.01 Da        Isoelectric Point: 7.9882

>NTDB_id=463332 HW576_RS26025 WP_256738028.1 5009934..5010431(-) (comFC) [Priestia megaterium strain BIM B-1314D]
MDCQKWNDASFFNRSLYTYNDFMQSIIERFKFQGDYEIIQAFKEQWYKCYKKECNPKAILVPIPLTDERLYERGFNQSLA
LAELISDNIEMPLVRCSGTKQSKKNRRSRLAERLEFKVVDSSMVTNQEFLLIDDIYTTGATVRQAASCLQEDGARSVRSL
TLIRA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=463332 HW576_RS26025 WP_256738028.1 5009934..5010431(-) (comFC) [Priestia megaterium strain BIM B-1314D]
ATGGACTGTCAGAAATGGAATGATGCTTCTTTTTTCAACCGTTCTCTTTATACGTACAATGATTTTATGCAAAGCATAAT
AGAACGTTTTAAATTTCAAGGAGATTATGAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTGCTATAAAAAAGAAT
GTAATCCAAAAGCTATACTAGTTCCTATACCTTTAACGGACGAGAGATTATATGAGAGAGGGTTTAACCAATCTTTAGCG
CTAGCTGAACTGATCAGTGACAACATAGAAATGCCTCTTGTTCGCTGTTCAGGAACAAAGCAATCAAAGAAAAATAGGCG
AAGTCGGCTGGCAGAAAGGCTGGAATTTAAAGTAGTCGATTCCTCAATGGTTACGAATCAAGAATTTCTCTTGATTGATG
ATATTTATACAACAGGAGCAACCGTGCGCCAAGCGGCAAGTTGTTTGCAGGAAGATGGGGCACGTTCAGTTCGTTCGCTC
ACTTTAATTCGTGCATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(78-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

46.512

100

0.485
  comFC/cflB Streptococcus mitis NCTC 12261

35.503

100

0.364