Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SAA6159_RS04650 Genome accession   NC_017338
Coordinates   987274..987843 (-) Length   189 a.a.
NCBI ID   WP_000287262.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JKD6159     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 982274..992843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6159_RS04630 (SAA6159_00879) - 983775..985133 (+) 1359 WP_000021865.1 TrkH family potassium uptake protein -
  SAA6159_RS04635 (SAA6159_00880) - 985272..986783 (+) 1512 WP_000414178.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  SAA6159_RS04650 (SAA6159_00881) comK/comK1 987274..987843 (-) 570 WP_000287262.1 competence protein ComK Regulator
  SAA6159_RS04655 (SAA6159_00882) - 988052..988270 (+) 219 WP_000876828.1 IDEAL domain-containing protein -
  SAA6159_RS04660 (SAA6159_00883) - 988351..989337 (-) 987 WP_000668819.1 lipoate--protein ligase -
  SAA6159_RS04665 (SAA6159_00884) - 989536..989712 (+) 177 WP_000214898.1 YkvS family protein -
  SAA6159_RS04670 (SAA6159_00885) - 989727..990329 (+) 603 WP_001033863.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SAA6159_RS04675 (SAA6159_02965) - 991008..991107 (+) 100 Protein_911 hypothetical protein -
  SAA6159_RS04680 (SAA6159_02970) - 991117..991389 (+) 273 WP_078055823.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22614.83 Da        Isoelectric Point: 9.6091

>NTDB_id=46332 SAA6159_RS04650 WP_000287262.1 987274..987843(-) (comK/comK1) [Staphylococcus aureus subsp. aureus JKD6159]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIENIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMVS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=46332 SAA6159_RS04650 WP_000287262.1 987274..987843(-) (comK/comK1) [Staphylococcus aureus subsp. aureus JKD6159]
ATGTATTCTCAAAATATTTATGTAATACGTAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGATGATCAAAGAAA
TGGTAGCGAAATTATCCGGTTCGATAAAACGCGTATACAAAATCCATTCAAAGTCCAGAAAATCATTGAACGTTCTTGCA
AATTTTATGGTAATACTTACCTAGGCAAAAAAGCAGAAACAAACCGCATCACTGGCATTTCAAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATAGAAAATATTAAGGAATTAAAAAATCGTAAATGTAAAGTAACTTTTATTAATAACGAATCTATTATTCTTCATGTTT
CATACCACAGTTTATGGCACCAATATAACAATTCCATTTTTTACTACTATATGGTAGATAAACAATCTCGCATGGTTTCT
AAAAATCCCGATCAACCTATAGATTATAATAAAGCCACATTAAACGTATTTGAAGCATTGACACGCTATTCCCTATTCGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

98.942

100

0.989
  comK/comK1 Staphylococcus aureus N315

98.942

100

0.989

Multiple sequence alignment