Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SAA6159_RS04515 Genome accession   NC_017338
Coordinates   956775..957761 (+) Length   328 a.a.
NCBI ID   WP_000959290.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JKD6159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951775..962761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6159_RS04495 (SAA6159_00852) - 952144..953766 (+) 1623 WP_000703299.1 peptide ABC transporter substrate-binding protein -
  SAA6159_RS04500 (SAA6159_00853) trpS 953886..954875 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SAA6159_RS04505 (SAA6159_00854) spxA 955169..955564 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SAA6159_RS04510 (SAA6159_00855) mecA 955935..956654 (+) 720 WP_001217732.1 adaptor protein MecA -
  SAA6159_RS04515 (SAA6159_00856) coiA 956775..957761 (+) 987 WP_000959290.1 competence protein CoiA Machinery gene
  SAA6159_RS04520 (SAA6159_00857) pepF 957809..959617 (+) 1809 WP_000082737.1 oligoendopeptidase F -
  SAA6159_RS04525 (SAA6159_00858) yjbH 960077..960883 (-) 807 WP_000896698.1 protease adaptor protein YjbH -
  SAA6159_RS04530 (SAA6159_00859) - 960906..961271 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SAA6159_RS04535 (SAA6159_00860) - 961375..961968 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  SAA6159_RS04540 (SAA6159_00861) - 962154..962501 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.40 Da        Isoelectric Point: 9.6529

>NTDB_id=46331 SAA6159_RS04515 WP_000959290.1 956775..957761(+) (coiA) [Staphylococcus aureus subsp. aureus JKD6159]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQMLQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=46331 SAA6159_RS04515 WP_000959290.1 956775..957761(+) (coiA) [Staphylococcus aureus subsp. aureus JKD6159]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATGCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATTAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
CTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

97.561

100

0.976
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment