Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNN66_RS05960 Genome accession   NZ_CP068823
Coordinates   1245630..1246367 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RIVM_C029494     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1240630..1251367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN66_RS05935 (JNN66_05935) tyrA 1241004..1242125 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JNN66_RS05940 (JNN66_05940) pheA 1242168..1243328 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  JNN66_RS05945 (JNN66_05945) pheL 1243427..1243474 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JNN66_RS05950 (JNN66_05950) raiA 1243578..1243919 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JNN66_RS05955 (JNN66_05955) - 1244180..1245526 (-) 1347 WP_024179531.1 IS4-like element IS4 family transposase -
  JNN66_RS05960 (JNN66_05960) comL 1245630..1246367 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JNN66_RS05965 (JNN66_05965) rluD 1246502..1247482 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNN66_RS05970 (JNN66_05970) yfiH 1247479..1248210 (+) 732 WP_000040147.1 purine nucleoside phosphorylase YfiH -
  JNN66_RS05975 (JNN66_05975) clpC 1248340..1250913 (+) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=463296 JNN66_RS05960 WP_000197686.1 1245630..1246367(-) (comL) [Escherichia coli strain RIVM_C029494]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=463296 JNN66_RS05960 WP_000197686.1 1245630..1246367(-) (comL) [Escherichia coli strain RIVM_C029494]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376