Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SAA6159_RS02630 Genome accession   NC_017338
Coordinates   563585..564154 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JKD6159     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 558585..569154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6159_RS02605 (SAA6159_00482) cysE 559798..560445 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SAA6159_RS02610 (SAA6159_00483) cysS 560429..561829 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  SAA6159_RS02615 (SAA6159_00484) - 561822..562226 (+) 405 WP_000370183.1 Mini-ribonuclease 3 -
  SAA6159_RS02620 (SAA6159_00485) rlmB 562234..562980 (+) 747 WP_000390331.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SAA6159_RS02625 (SAA6159_00486) - 562980..563504 (+) 525 WP_000664741.1 NYN domain-containing protein -
  SAA6159_RS02630 (SAA6159_00487) sigH 563585..564154 (+) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  SAA6159_RS02635 (SAA6159_02885) rpmG 564269..564412 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SAA6159_RS02640 (SAA6159_00488) secE 564468..564650 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SAA6159_RS02645 (SAA6159_00489) nusG 564663..565211 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SAA6159_RS02650 (SAA6159_00490) rplK 565392..565814 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SAA6159_RS02655 (SAA6159_00491) rplA 566022..566714 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SAA6159_RS02660 (SAA6159_00492) rplJ 566986..567486 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SAA6159_RS02665 (SAA6159_00493) rplL 567529..567897 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SAA6159_RS02670 (SAA6159_00494) - 568072..568680 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=46324 SAA6159_RS02630 WP_000872876.1 563585..564154(+) (sigH) [Staphylococcus aureus subsp. aureus JKD6159]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=46324 SAA6159_RS02630 WP_000872876.1 563585..564154(+) (sigH) [Staphylococcus aureus subsp. aureus JKD6159]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment