Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   HW271_RS06390 Genome accession   NZ_CP058258
Coordinates   1307809..1309041 (-) Length   410 a.a.
NCBI ID   WP_006145154.1    Uniprot ID   A0A1S1GYW6
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302809..1314041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS06365 (HW271_06365) whiA 1303999..1304910 (-) 912 WP_178895322.1 DNA-binding protein WhiA -
  HW271_RS06370 (HW271_06370) - 1304907..1305884 (-) 978 WP_178895323.1 YvcK family protein -
  HW271_RS06375 (HW271_06375) rapZ 1305881..1306771 (-) 891 WP_178895324.1 RNase adapter RapZ -
  HW271_RS06380 (HW271_06380) - 1306823..1307203 (-) 381 WP_001140424.1 RidA family protein -
  HW271_RS06385 (HW271_06385) yihA 1307213..1307800 (-) 588 WP_178895325.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  HW271_RS06390 (HW271_06390) clpX 1307809..1309041 (-) 1233 WP_006145154.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HW271_RS06395 (HW271_06395) - 1309073..1309243 (-) 171 WP_000442253.1 hypothetical protein -
  HW271_RS06400 (HW271_06400) - 1309243..1309749 (-) 507 WP_178895326.1 dihydrofolate reductase -
  HW271_RS06405 (HW271_06405) - 1309877..1310395 (-) 519 WP_178895327.1 DNA starvation/stationary phase protection protein -
  HW271_RS06410 (HW271_06410) - 1310544..1312325 (-) 1782 WP_178895328.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45644.18 Da        Isoelectric Point: 4.4806

>NTDB_id=463230 HW271_RS06390 WP_006145154.1 1307809..1309041(-) (clpX) [Streptococcus sp. oral taxon 061 strain F0704]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAVD
GTAKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=463230 HW271_RS06390 WP_006145154.1 1307809..1309041(-) (clpX) [Streptococcus sp. oral taxon 061 strain F0704]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTTAAAAAAATAAT
CGCTGGGAACAACGCTTTTATCTGTAATGAGTGTGTGGAGTTAGCCCAGGAAATTATTCGTGAGGAGTTGGCAGAGGAAG
TCCTAGCAGACTTATCTGAAGTACCAAAACCAATCGAACTCTTAAACATCTTGAACCACTATGTGATTGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTAGCTGTATATAACCACTACAAACGCATCAATTTCCATGACACTCGTGAAGAGTCAGAAGA
TGTGGATTTGCAAAAATCAAACATTTTGATGATTGGCCCAACAGGTTCAGGTAAGACTTTCCTTGCTCAAACTCTTGCTA
GAAGTTTGAATGTACCTTTTGCCATCGCAGATGCAACAGCTCTTACTGAGGCTGGTTATGTAGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAAGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGAATTATCTATGTAGATGAGATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAAGGAACTGTAGCTAGTGTACCACCACAAGGTGGACGTAAACATCCACAACAAGAAATGATTCAAGTGGATACA
AAAAACATCCTCTTTATTGTGGGTGGTGCCTTCGATGGCATCGAAGAGATTGTCAAACAGCGTCTGGGTGAAAAAGTGAT
TGGTTTCGGACAAAACAACAAGGCTATTGACGAAAATAGTTCTTACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TCGGTATTATTCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCAGCCTTGGAGCAGTTGACTGTAGATGATTTGGTTCGC
ATCTTGAAGGAACCAAGAAATGCCTTGGTTAAACAATACCAGACCTTGCTTTCTTATGATGATGTTGAGCTTGAATTTGA
CGACGAAGCTCTCCAAGAAATTGCAAACAAAGCCATCGAACGTAAAACGGGTGCGCGTGGTCTTCGCTCAATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTTCCAAGTCAAGAAAATGTGAAAACTGTTCGTATCACAAAAGAAGCAGTTGAC
GGAACGGCTAAGCCAATTCTAGAGACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S1GYW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563