Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HWH77_RS07860 Genome accession   NZ_CP058216
Coordinates   1556784..1557473 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain LF01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551784..1562473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH77_RS07825 (HWH77_07830) fliW 1551875..1552306 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  HWH77_RS07830 (HWH77_07835) - 1552336..1552905 (-) 570 WP_003151397.1 DUF6470 family protein -
  HWH77_RS07835 (HWH77_07840) flgL 1552996..1553913 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  HWH77_RS07840 (HWH77_07845) flgK 1553925..1555442 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  HWH77_RS07845 (HWH77_07850) - 1555458..1555940 (-) 483 WP_003151394.1 flagellar protein FlgN -
  HWH77_RS07850 (HWH77_07855) flgM 1555955..1556221 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HWH77_RS07855 (HWH77_07860) - 1556291..1556710 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  HWH77_RS07860 (HWH77_07865) comFC 1556784..1557473 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  HWH77_RS07865 (HWH77_07870) - 1557479..1557763 (-) 285 WP_057080260.1 late competence development ComFB family protein -
  HWH77_RS07870 (HWH77_07875) comFA 1557821..1559206 (-) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  HWH77_RS07875 (HWH77_07880) - 1559314..1560162 (-) 849 WP_043867471.1 DegV family protein -
  HWH77_RS07880 (HWH77_07885) degU 1560260..1560949 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HWH77_RS07885 (HWH77_07890) degS 1561026..1562189 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=462700 HWH77_RS07860 WP_196616643.1 1556784..1557473(-) (comFC) [Bacillus velezensis strain LF01]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=462700 HWH77_RS07860 WP_196616643.1 1556784..1557473(-) (comFC) [Bacillus velezensis strain LF01]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603