Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HWH77_RS07880 Genome accession   NZ_CP058216
Coordinates   1560260..1560949 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain LF01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555260..1565949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH77_RS07845 (HWH77_07850) - 1555458..1555940 (-) 483 WP_003151394.1 flagellar protein FlgN -
  HWH77_RS07850 (HWH77_07855) flgM 1555955..1556221 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HWH77_RS07855 (HWH77_07860) - 1556291..1556710 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  HWH77_RS07860 (HWH77_07865) comFC 1556784..1557473 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  HWH77_RS07865 (HWH77_07870) - 1557479..1557763 (-) 285 WP_057080260.1 late competence development ComFB family protein -
  HWH77_RS07870 (HWH77_07875) comFA 1557821..1559206 (-) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  HWH77_RS07875 (HWH77_07880) - 1559314..1560162 (-) 849 WP_043867471.1 DegV family protein -
  HWH77_RS07880 (HWH77_07885) degU 1560260..1560949 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HWH77_RS07885 (HWH77_07890) degS 1561026..1562189 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  HWH77_RS07890 (HWH77_07895) - 1562412..1563059 (+) 648 WP_043867472.1 YigZ family protein -
  HWH77_RS07895 (HWH77_07900) - 1563064..1564278 (+) 1215 WP_043867473.1 LCP family protein -
  HWH77_RS07900 (HWH77_07905) - 1564368..1565444 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=462702 HWH77_RS07880 WP_003219701.1 1560260..1560949(-) (degU) [Bacillus velezensis strain LF01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=462702 HWH77_RS07880 WP_003219701.1 1560260..1560949(-) (degU) [Bacillus velezensis strain LF01]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1