Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   HWH77_RS05965 Genome accession   NZ_CP058216
Coordinates   1185104..1185244 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain LF01     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180104..1190244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH77_RS05945 (HWH77_05950) - 1180409..1180792 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  HWH77_RS05950 (HWH77_05955) comA 1180814..1181458 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  HWH77_RS05955 (HWH77_05960) - 1181539..1183838 (-) 2300 Protein_1174 histidine kinase -
  HWH77_RS05960 (HWH77_05965) comQ 1184101..1184973 (-) 873 WP_322783770.1 class 1 isoprenoid biosynthesis enzyme Regulator
  HWH77_RS05965 (HWH77_05970) degQ 1185104..1185244 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  HWH77_RS05970 (HWH77_05975) - 1185710..1186051 (+) 342 WP_003152040.1 hypothetical protein -
  HWH77_RS05975 (HWH77_05980) - 1186058..1187278 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  HWH77_RS05980 (HWH77_05985) - 1187408..1188874 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  HWH77_RS05985 (HWH77_05990) - 1188892..1189443 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  HWH77_RS05990 (HWH77_05995) - 1189540..1189938 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=462697 HWH77_RS05965 WP_003152043.1 1185104..1185244(-) (degQ) [Bacillus velezensis strain LF01]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=462697 HWH77_RS05965 WP_003152043.1 1185104..1185244(-) (degQ) [Bacillus velezensis strain LF01]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891