Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HWH77_RS05950 Genome accession   NZ_CP058216
Coordinates   1180814..1181458 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain LF01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175814..1186458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH77_RS05915 (HWH77_05920) - 1176999..1177430 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  HWH77_RS05920 (HWH77_05925) - 1177430..1177771 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  HWH77_RS05925 (HWH77_05930) - 1177764..1179245 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  HWH77_RS05930 (HWH77_05935) - 1179251..1179727 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  HWH77_RS05935 (HWH77_05940) - 1179727..1180011 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  HWH77_RS05940 (HWH77_05945) mnhG 1179995..1180369 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  HWH77_RS05945 (HWH77_05950) - 1180409..1180792 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  HWH77_RS05950 (HWH77_05955) comA 1180814..1181458 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  HWH77_RS05955 (HWH77_05960) - 1181539..1183838 (-) 2300 Protein_1174 histidine kinase -
  HWH77_RS05960 (HWH77_05965) comQ 1184101..1184973 (-) 873 WP_322783770.1 class 1 isoprenoid biosynthesis enzyme Regulator
  HWH77_RS05965 (HWH77_05970) degQ 1185104..1185244 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  HWH77_RS05970 (HWH77_05975) - 1185710..1186051 (+) 342 WP_003152040.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=462695 HWH77_RS05950 WP_003152052.1 1180814..1181458(-) (comA) [Bacillus velezensis strain LF01]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=462695 HWH77_RS05950 WP_003152052.1 1180814..1181458(-) (comA) [Bacillus velezensis strain LF01]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGGACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864