Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNN56_RS06675 Genome accession   NZ_CP068814
Coordinates   1385116..1385853 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RIVM_C028613     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380116..1390853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN56_RS06645 (JNN56_06645) yfiL 1380275..1380640 (-) 366 WP_019842457.1 DUF2799 domain-containing protein -
  JNN56_RS06650 (JNN56_06650) aroF 1380849..1381919 (+) 1071 WP_202845954.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JNN56_RS06655 (JNN56_06655) tyrA 1381930..1383051 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JNN56_RS06660 (JNN56_06660) pheA 1383094..1384254 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JNN56_RS06665 (JNN56_06665) pheL 1384353..1384400 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JNN56_RS06670 (JNN56_06670) raiA 1384504..1384845 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JNN56_RS06675 (JNN56_06675) comL 1385116..1385853 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JNN56_RS06680 (JNN56_06680) rluD 1385988..1386968 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNN56_RS06685 (JNN56_06685) yfiH 1386965..1387696 (+) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  JNN56_RS06690 (JNN56_06690) clpC 1387826..1390399 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=462518 JNN56_RS06675 WP_000197686.1 1385116..1385853(-) (comL) [Escherichia coli strain RIVM_C028613]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=462518 JNN56_RS06675 WP_000197686.1 1385116..1385853(-) (comL) [Escherichia coli strain RIVM_C028613]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376