Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SAPIG_RS06490 Genome accession   NC_017333
Coordinates   1304825..1305697 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ST398     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1299825..1310697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAPIG_RS06465 (SAPIG1244) - 1299972..1300739 (+) 768 WP_000176395.1 ribonuclease HII -
  SAPIG_RS06470 (SAPIG1245) sucC 1300848..1302014 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  SAPIG_RS06475 (SAPIG1246) sucD 1302036..1302944 (+) 909 WP_000110258.1 succinate--CoA ligase subunit alpha -
  SAPIG_RS15990 - 1303171..1303227 (+) 57 Protein_1259 YSIRK-type signal peptide-containing protein -
  SAPIG_RS06480 (SAPIG1247) - 1303231..1303383 (+) 153 Protein_1260 cell wall hydrolase -
  SAPIG_RS15790 fmhC 1303411..1304654 (+) 1244 Protein_1261 FemA/FemB family glycyltransferase FmhC -
  SAPIG_RS06490 (SAPIG1251) dprA 1304825..1305697 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  SAPIG_RS06495 (SAPIG1252) topA 1305871..1307946 (+) 2076 WP_001807811.1 type I DNA topoisomerase -
  SAPIG_RS06500 (SAPIG1253) trmFO 1308102..1309409 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=46244 SAPIG_RS06490 WP_000620182.1 1304825..1305697(+) (dprA) [Staphylococcus aureus subsp. aureus ST398]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=46244 SAPIG_RS06490 WP_000620182.1 1304825..1305697(+) (dprA) [Staphylococcus aureus subsp. aureus ST398]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCTGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986

Multiple sequence alignment