Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNN39_RS06125 Genome accession   NZ_CP068809
Coordinates   1288114..1288851 (-) Length   245 a.a.
NCBI ID   WP_000197692.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C028497     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283114..1293851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN39_RS06095 (JNN39_06095) yfiL 1283273..1283638 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  JNN39_RS06100 (JNN39_06100) aroF 1283848..1284918 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JNN39_RS06105 (JNN39_06105) tyrA 1284929..1286050 (+) 1122 WP_000225234.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JNN39_RS06110 (JNN39_06110) pheA 1286093..1287253 (-) 1161 WP_000200091.1 bifunctional chorismate mutase/prephenate dehydratase -
  JNN39_RS06115 (JNN39_06115) pheL 1287352..1287399 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JNN39_RS06120 (JNN39_06120) raiA 1287503..1287844 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JNN39_RS06125 (JNN39_06125) comL 1288114..1288851 (-) 738 WP_000197692.1 outer membrane protein assembly factor BamD Machinery gene
  JNN39_RS06130 (JNN39_06130) rluD 1288986..1289966 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JNN39_RS06135 (JNN39_06135) yfiH 1289963..1290694 (+) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  JNN39_RS06140 (JNN39_06140) clpC 1290824..1293397 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27928.53 Da        Isoelectric Point: 7.1589

>NTDB_id=462089 JNN39_RS06125 WP_000197692.1 1288114..1288851(-) (comL) [Escherichia coli strain RIVM_C028497]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQRFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=462089 JNN39_RS06125 WP_000197692.1 1288114..1288851(-) (comL) [Escherichia coli strain RIVM_C028497]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAAGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376